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Overview
1.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LR134375.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | ranthipeptide | 1,350,739 | 1,372,458 |

NZ_LR134375.1 - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 1,350,739 - 1,372,458 nt. (total: 21,720 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
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Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.18 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0000780.1 |  | 0.17 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0001765.1 |  | 0.17 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0001380.1 |  | 0.17 | Saccharide | salecan | Agrobacterium sp. ZX09
BGC0001947.1 |  | 0.17 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000760.1 |  | 0.17 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0000787.1 |  | 0.16 | Saccharide | O-antigen | Escherichia coli
BGC0000799.1 |  | 0.16 | Saccharide | colanic acid | Escherichia coli
BGC0000773.1 |  | 0.16 | Saccharide | lipopolysaccharide | Escherichia coli
BGC0000788.1 |  | 0.16 | Saccharide | O-antigen | Salmonella enterica subsp. salamae serovar Greenside

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.49 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0000780.1 |  | 0.49 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0001765.1 |  | 0.49 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0001380.1 |  | 0.49 | Saccharide | salecan | Agrobacterium sp. ZX09
BGC0001947.1 |  | 0.48 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000760.1 |  | 0.48 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0000787.1 |  | 0.47 | Saccharide | O-antigen | Escherichia coli
BGC0000799.1 |  | 0.47 | Saccharide | colanic acid | Escherichia coli
BGC0000773.1 |  | 0.47 | Saccharide | lipopolysaccharide | Escherichia coli
BGC0000788.1 |  | 0.47 | Saccharide | O-antigen | Salmonella enterica subsp. salamae serovar Greenside

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
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No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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