GCF_022453685.1_ASM2245368v1_genomic - 7 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP092643.1

Region	Type	From	To
Region 1	cyclic-lactone-autoinducer,RiPP-like	833,170	852,515
Region 2	ranthipeptide	898,397	920,008
Region 3	cyclic-lactone-autoinducer	1,215,767	1,235,496
Region 4	cyclic-lactone-autoinducer	1,773,036	1,792,617
Region 5	cyclic-lactone-autoinducer	2,307,192	2,327,325
Region 6	RiPP-like	2,922,910	2,935,141
Region 7	cyclic-lactone-autoinducer	3,043,307	3,064,282

NZ_CP092643.1 - Region 1 - RiPP-like,cyclic-lactone-autoinducer

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Location: 833,170 - 852,515 nt. (total: 19,346 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.54	RiPP	coagulin	Bacillus coagulans
BGC0000624.1	0.49	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000619.1	0.49	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.49	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.48	RiPP	gassericin E	Lactobacillus gasseri
BGC0000488.1	0.47	RiPP	circularin A	Clostridium beijerinckii
BGC0000558.1	0.47	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000554.1	0.42	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001645.1	0.32	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0001210.1	0.32	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.61	RiPP	coagulin	Bacillus coagulans
BGC0000488.1	0.59	RiPP	circularin A	Clostridium beijerinckii
BGC0000624.1	0.58	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000619.1	0.58	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.58	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.58	RiPP	gassericin E	Lactobacillus gasseri
BGC0000558.1	0.56	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000554.1	0.54	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000487.1	0.48	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001645.1	0.47	RiPP	lagmysin	Streptomyces sp. NRRL S-118

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP092643.1 - Region 2 - ranthipeptide

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Location: 898,397 - 920,008 nt. (total: 21,612 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001150.1	0.14	Polyketide	pamamycin-607	Streptomyces alboniger
BGC0000243.1	0.14	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000847.1	0.11	Other (Non-NRP beta-lactam)	thienamycin	Streptomyces cattleya
BGC0002034.1	0.07	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0000220.1	0.07	Polyketide	enterocin	Streptomyces maritimus
BGC0001233.1	0.06	NRP	feglymycin	Streptomyces sp. DSM 11171
BGC0001095.1	0.05	NRP	fengycin	Bacillus velezensis FZB42
BGC0001819.1	0.05	Polyketide	venemycin	Streptomyces venezuelae
BGC0001202.1	0.05	NRP, Polyketide	landepoxcin	uncultured bacterium AR_412
BGC0001945.1	0.05	NRP	chloromyxamide	Myxococcus sp.

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001150.1	0.43	Polyketide	pamamycin-607	Streptomyces alboniger
BGC0000243.1	0.43	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000847.1	0.37	Other (Non-NRP beta-lactam)	thienamycin	Streptomyces cattleya
BGC0002034.1	0.30	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0000220.1	0.29	Polyketide	enterocin	Streptomyces maritimus
BGC0001233.1	0.25	NRP	feglymycin	Streptomyces sp. DSM 11171
BGC0001095.1	0.24	NRP	fengycin	Bacillus velezensis FZB42
BGC0001819.1	0.23	Polyketide	venemycin	Streptomyces venezuelae
BGC0001202.1	0.23	NRP, Polyketide	landepoxcin	uncultured bacterium AR_412
BGC0001945.1	0.23	NRP	chloromyxamide	Myxococcus sp.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP092643.1 - Region 3 - cyclic-lactone-autoinducer

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Location: 1,215,767 - 1,235,496 nt. (total: 19,730 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001618.1	0.17	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000626.1	0.16	RiPP	thuricin	Bacillus thuringiensis
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000555.1	0.16	RiPP	staphylococcin C55 α, staphylococcin C55 β	Staphylococcus aureus
BGC0001391.1	0.16	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0000497.1	0.16	RiPP	BHT-Aα, BHT-Aβ	Streptococcus ratti
BGC0001743.1	0.16	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000571.1	0.15	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000552.1	0.15	RiPP	SmbA, SmbB	Streptococcus mutans
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001618.1	0.48	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000626.1	0.47	RiPP	thuricin	Bacillus thuringiensis
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000555.1	0.46	RiPP	staphylococcin C55 α, staphylococcin C55 β	Staphylococcus aureus
BGC0001391.1	0.46	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0000497.1	0.46	RiPP	BHT-Aα, BHT-Aβ	Streptococcus ratti
BGC0001743.1	0.46	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000571.1	0.46	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000552.1	0.46	RiPP	SmbA, SmbB	Streptococcus mutans
BGC0000294.1	0.44	NRP	acinetobactin	Acinetobacter baumannii

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP092643.1 - Region 4 - cyclic-lactone-autoinducer

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Location: 1,773,036 - 1,792,617 nt. (total: 19,582 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0001783.1	0.14	Other	streptonigrin	Streptomyces flocculus
BGC0000783.1	0.14	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0001618.1	0.14	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0001607.1	0.14	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0001891.1	0.14	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001484.1	0.13	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0000243.1	0.13	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001222.1	0.47	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000486.1	0.47	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000491.1	0.47	RiPP	gassericin A	Lactobacillus gasseri
BGC0001783.1	0.43	Other	streptonigrin	Streptomyces flocculus
BGC0000783.1	0.43	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0001618.1	0.43	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0001607.1	0.43	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0001891.1	0.43	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001484.1	0.42	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0000243.1	0.42	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP092643.1 - Region 5 - cyclic-lactone-autoinducer

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Location: 2,307,192 - 2,327,325 nt. (total: 20,134 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000528.1	0.16	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000538.1	0.16	RiPP	nisin Z	Lactococcus lactis
BGC0001289.1	0.15	RiPP	penisin	Paenibacillus ehimensis
BGC0000556.1	0.15	RiPP	streptin	Streptococcus pyogenes
BGC0000506.1	0.14	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000547.1	0.14	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000515.1	0.14	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0001787.1	0.14	RiPP	suicin 3908	Streptococcus suis
BGC0000243.1	0.14	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000528.1	0.47	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000538.1	0.46	RiPP	nisin Z	Lactococcus lactis
BGC0001289.1	0.45	RiPP	penisin	Paenibacillus ehimensis
BGC0000556.1	0.44	RiPP	streptin	Streptococcus pyogenes
BGC0000506.1	0.44	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000547.1	0.44	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000515.1	0.44	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0001787.1	0.44	RiPP	suicin 3908	Streptococcus suis
BGC0000243.1	0.43	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP092643.1 - Region 6 - RiPP-like

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Location: 2,922,910 - 2,935,141 nt. (total: 12,232 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000558.1	0.23	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000554.1	0.21	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001862.1	0.20	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.20	RiPP	pallidocin	Aeribacillus pallidus
BGC0001861.1	0.20	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000504.1	0.19	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000617.1	0.19	RiPP	coagulin	Bacillus coagulans
BGC0000500.1	0.19	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000624.1	0.17	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000558.1	0.57	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000554.1	0.53	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001862.1	0.53	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.53	RiPP	pallidocin	Aeribacillus pallidus
BGC0001861.1	0.53	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000504.1	0.51	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000617.1	0.51	RiPP	coagulin	Bacillus coagulans
BGC0000500.1	0.51	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000624.1	0.48	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP092643.1 - Region 7 - cyclic-lactone-autoinducer

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Location: 3,043,307 - 3,064,282 nt. (total: 20,976 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000571.1	0.15	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001887.1	0.14	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000542.1	0.14	RiPP	paenicidin B	Paenibacillus terrae
BGC0000541.1	0.14	RiPP	paenicidin A	Paenibacillus polymyxa
BGC0001311.1	0.14	RiPP	flavecins	Ruminococcus flavefaciens FD-1
BGC0000703.1	0.14	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001391.1	0.14	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0000548.1	0.13	RiPP	salivaricin A	Streptococcus salivarius

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000571.1	0.46	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001887.1	0.43	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000542.1	0.43	RiPP	paenicidin B	Paenibacillus terrae
BGC0000541.1	0.43	RiPP	paenicidin A	Paenibacillus polymyxa
BGC0001311.1	0.43	RiPP	flavecins	Ruminococcus flavefaciens FD-1
BGC0000703.1	0.43	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001391.1	0.43	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0000548.1	0.42	RiPP	salivaricin A	Streptococcus salivarius

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names