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Overview
1.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP069440.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | RRE-containing | 212,387 | 232,653 |

NZ_CP069440.1 - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 212,387 - 232,653 nt. (total: 20,267 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
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Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000868.1 |  | 0.17 | Other | teichuronic acid | Bacillus subtilis subsp. subtilis str. 168
BGC0000732.1 |  | 0.17 | Saccharide | capsular polysaccharide | Raoultella planticola
BGC0000733.1 |  | 0.17 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000794.1 |  | 0.17 | Saccharide | S-layer glycan | Geobacillus stearothermophilus
BGC0000765.1 |  | 0.16 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000799.1 |  | 0.16 | Saccharide | colanic acid | Escherichia coli
BGC0000787.1 |  | 0.16 | Saccharide | O-antigen | Escherichia coli
BGC0000766.1 |  | 0.16 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0001588.1 |  | 0.16 | Saccharide | exopolysaccharides | Burkholderia pseudomallei 1026b
BGC0000761.1 |  | 0.16 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000868.1 |  | 0.49 | Other | teichuronic acid | Bacillus subtilis subsp. subtilis str. 168
BGC0000732.1 |  | 0.48 | Saccharide | capsular polysaccharide | Raoultella planticola
BGC0000733.1 |  | 0.48 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000794.1 |  | 0.48 | Saccharide | S-layer glycan | Geobacillus stearothermophilus
BGC0000765.1 |  | 0.47 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000799.1 |  | 0.47 | Saccharide | colanic acid | Escherichia coli
BGC0000787.1 |  | 0.47 | Saccharide | O-antigen | Escherichia coli
BGC0000766.1 |  | 0.47 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0001588.1 |  | 0.46 | Saccharide | exopolysaccharides | Burkholderia pseudomallei 1026b
BGC0000761.1 |  | 0.46 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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