GCF_000688415.1_ASM68841v1_genomic - 2 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_JIAH01000005 (original name was: NZ_JIAH01000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	terpene	1	11,323
Region 5.2	T1PKS	29,415	74,427

Region	Type	From	To	Most similar known cluster	Similarity
Region 5.1	terpene	1	11,323
Region 5.2	T1PKS	29,415	74,427

No secondary metabolite regions were found in these records:: NZ_JIAH01000001 (original name was: NZ_JIAH01000001.1); NZ_JIAH01000002 (original name was: NZ_JIAH01000002.1); NZ_JIAH01000003 (original name was: NZ_JIAH01000003.1); NZ_JIAH01000004 (original name was: NZ_JIAH01000004.1); NZ_JIAH01000006 (original name was: NZ_JIAH01000006.1); NZ_JIAH01000007 (original name was: NZ_JIAH01000007.1); NZ_JIAH01000008 (original name was: NZ_JIAH01000008.1); NZ_JIAH01000009 (original name was: NZ_JIAH01000009.1); NZ_JIAH01000010 (original name was: NZ_JIAH01000010.1); NZ_JIAH01000011 (original name was: NZ_JIAH01000011.1); NZ_JIAH01000012 (original name was: NZ_JIAH01000012.1); NZ_JIAH01000013 (original name was: NZ_JIAH01000013.1)

Compact view

c00005_NZ_JIAH.. - Region 1 - terpene

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Location: 1 - 11,323 nt. (total: 11,323 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.28	Terpene	carotenoid	Myxococcus xanthus
BGC0000650.1	0.25	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000637.1	0.17	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000644.1	0.17	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000636.1	0.14	Terpene	carotenoid	Brevibacterium linens
BGC0001928.1	0.14	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000666.1	0.14	Terpene	xiamycin A	Streptomyces sp. SCSIO 02999
BGC0000665.1	0.13	Terpene, Alkaloid	xiamycin	Streptomyces sp. HKI0576
BGC0000503.1	0.12	RiPP	cinnamycin	Streptomyces cinnamoneus
BGC0002015.1	0.08	RiPP	aborycin	Streptomyces sp. ZS0098

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.61	Terpene	carotenoid	Myxococcus xanthus
BGC0000650.1	0.58	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000637.1	0.49	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000644.1	0.48	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000636.1	0.44	Terpene	carotenoid	Brevibacterium linens
BGC0001928.1	0.43	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000666.1	0.43	Terpene	xiamycin A	Streptomyces sp. SCSIO 02999
BGC0000665.1	0.42	Terpene, Alkaloid	xiamycin	Streptomyces sp. HKI0576
BGC0000503.1	0.39	RiPP	cinnamycin	Streptomyces cinnamoneus
BGC0002015.1	0.32	RiPP	aborycin	Streptomyces sp. ZS0098

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00005_NZ_JIAH.. - Region 2 - T1PKS

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Location: 29,415 - 74,427 nt. (total: 45,013 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001909.1	0.32	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001831.1	0.24	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001161.1	0.21	Polyketide	1-heptadecene	Moorea bouillonii PNG
BGC0001162.1	0.21	Polyketide	1-heptadecene	Moorea producens JHB
BGC0001163.1	0.21	Polyketide	1-heptadecene	Moorea producens 3L
BGC0000044.1	0.20	Polyketide	dawenol	Stigmatella aurantiaca DW4/3-1
BGC0001264.1	0.19	Polyketide	betaenone A, betaenone B, betaenone C	Phoma betae
BGC0001280.1	0.19	Polyketide	betaenone C, betaenone A	Phoma betae
BGC0000138.1	0.19	Polyketide	rimocidin	Streptomyces diastaticus
BGC0001276.1	0.19	Polyketide	6-methylsalicyclic acid	Aspergillus terreus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001909.1	0.65	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001831.1	0.57	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001161.1	0.54	Polyketide	1-heptadecene	Moorea bouillonii PNG
BGC0001162.1	0.54	Polyketide	1-heptadecene	Moorea producens JHB
BGC0001163.1	0.54	Polyketide	1-heptadecene	Moorea producens 3L
BGC0000044.1	0.53	Polyketide	dawenol	Stigmatella aurantiaca DW4/3-1
BGC0001264.1	0.51	Polyketide	betaenone A, betaenone B, betaenone C	Phoma betae
BGC0001280.1	0.51	Polyketide	betaenone C, betaenone A	Phoma betae
BGC0000138.1	0.51	Polyketide	rimocidin	Streptomyces diastaticus
BGC0001276.1	0.51	Polyketide	6-methylsalicyclic acid	Aspergillus terreus

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 29414 - 74427:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg5_45

CAL_domain (200..528): pk

minowa: NH2

Prediction, score:

NH2: 64.5
Acetyl-CoA: 21.6
fatty_acid: 9.3
shikimic_acid: 0.0
AHBA: 0.0

ctg5_46

PKS_AT (654..957): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 62.5%

minowa: fatty_acid

Prediction, score:

fatty_acid: 97.0
Methoxymalonyl-CoA: 74.0
Methylmalonyl-CoA: 71.1
Malonyl-CoA: 67.0
Ethylmalonyl-CoA: 45.5
Propionyl-CoA: 37.4
trans-1,2-CPDA: 36.0
Isobutyryl-CoA: 34.2
Acetyl-CoA: 25.2
2-Methylbutyryl-CoA: 21.4
CHC-CoA: 14.9
Benzoyl-CoA: 12.6
inactive: 10.2
3-Methylbutyryl-CoA: 0.0