Select genomic region:
Overview
1.1
2.1
2.2
3.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP033031.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 1,226,518 | 1,247,363 |

NZ_CP033032.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | thioamitides | 683,430 | 705,336 |
Region 2.2 | NRPS | 1,792,637 | 1,837,121 | turnerbactin | NRP | 30%

NZ_CP033033.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | hserlactone | 149,044 | 160,006 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 1,226,518 | 1,247,363 |
Region 2.1 | thioamitides | 683,430 | 705,336 |
Region 2.2 | NRPS | 1,792,637 | 1,837,121 | turnerbactin | NRP | 30%
Region 3.1 | hserlactone | 149,044 | 160,006 |

Compact view
NZ_CP033031.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,226,518 - 1,247,363 nt. (total: 20,846 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000660.1 |  | 0.24 | Terpene | albaflavenone | Streptomyces coelicolor A3(2)
BGC0001336.1 |  | 0.23 | Alkaloid | erdasporine A, erdasporine B, erdasporine C | uncultured bacterium
BGC0000674.1 |  | 0.23 | Terpene | (-)-δ-cadinene | Streptomyces clavuligerus ATCC 27064
BGC0000676.1 |  | 0.23 | Terpene | aphidicolin, aphidicolan-16β-ol, 3-deoxyaphidicolin, 17-deoxyaphidicolin | Phoma betae
BGC0000678.1 |  | 0.21 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000286.1 |  | 0.21 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000675.1 |  | 0.21 | Terpene | (+)-T-muurolol | Streptomyces clavuligerus ATCC 27064
BGC0001223.1 |  | 0.19 | Other | hydroxysporine | uncultured bacterium
BGC0000823.1 |  | 0.18 | Alkaloid | rebeccamycin | Lechevalieria aerocolonigenes
BGC0001225.1 |  | 0.18 | NRP | celesticetin | Streptomyces caelestis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000660.1 |  | 0.57 | Terpene | albaflavenone | Streptomyces coelicolor A3(2)
BGC0001336.1 |  | 0.56 | Alkaloid | erdasporine A, erdasporine B, erdasporine C | uncultured bacterium
BGC0000674.1 |  | 0.56 | Terpene | (-)-δ-cadinene | Streptomyces clavuligerus ATCC 27064
BGC0000676.1 |  | 0.56 | Terpene | aphidicolin, aphidicolan-16β-ol, 3-deoxyaphidicolin, 17-deoxyaphidicolin | Phoma betae
BGC0000678.1 |  | 0.54 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000286.1 |  | 0.53 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000675.1 |  | 0.53 | Terpene | (+)-T-muurolol | Streptomyces clavuligerus ATCC 27064
BGC0001223.1 |  | 0.51 | Other | hydroxysporine | uncultured bacterium
BGC0000823.1 |  | 0.50 | Alkaloid | rebeccamycin | Lechevalieria aerocolonigenes
BGC0001225.1 |  | 0.50 | NRP | celesticetin | Streptomyces caelestis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP033032.1 - Region 1 - thioamitides
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 683,430 - 705,336 nt. (total: 21,907 nt) Show pHMM detection rules used
thioamitides: ((YcaO or TIGR03882) and TfuA)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | thioamitides | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001849.1 |  | 0.23 | RiPP | thiovarsolin A, thiovarsolin B, thiovarsolin C, thiovarsolin D | Streptomyces varsoviensis
BGC0000244.1 |  | 0.18 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0000554.1 |  | 0.17 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000518.1 |  | 0.17 | RiPP | informatipeptin | Streptomyces viridochromogenes DSM 40736
BGC0000517.1 |  | 0.17 | RiPP | haloduracin β, haloduracin α | Bacillus halodurans C-125
BGC0000487.1 |  | 0.17 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0001210.1 |  | 0.16 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000551.1 |  | 0.16 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000571.1 |  | 0.16 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0000501.1 |  | 0.16 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001849.1 |  | 0.56 | RiPP | thiovarsolin A, thiovarsolin B, thiovarsolin C, thiovarsolin D | Streptomyces varsoviensis
BGC0000244.1 |  | 0.50 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0000554.1 |  | 0.48 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000518.1 |  | 0.48 | RiPP | informatipeptin | Streptomyces viridochromogenes DSM 40736
BGC0000517.1 |  | 0.47 | RiPP | haloduracin β, haloduracin α | Bacillus halodurans C-125
BGC0000487.1 |  | 0.47 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0001210.1 |  | 0.47 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000551.1 |  | 0.47 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000571.1 |  | 0.47 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0000501.1 |  | 0.47 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP033032.1 - Region 2 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,792,637 - 1,837,121 nt. (total: 44,485 nt) Show pHMM detection rules used
NRPS: cds(Condensation and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NRPS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001302.1 |  | 0.33 | Other | lomofungin | Streptomyces lomondensis
BGC0001185.1 |  | 0.28 | NRP | bacillibactin | Bacillus velezensis FZB42
BGC0001778.1 |  | 0.27 | Other | showdomycin | Streptomyces showdoensis
BGC0001983.1 |  | 0.25 | Other | triacsins | Kitasatospora aureofaciens
BGC0000401.1 |  | 0.24 | NRP | paenibactin | Paenibacillus elgii B69
BGC0000225.1 |  | 0.22 | Polyketide | frenolicin B | Streptomyces roseofulvus
BGC0001343.1 |  | 0.22 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0000220.1 |  | 0.22 | Polyketide | enterocin | Streptomyces maritimus
BGC0001940.1 |  | 0.22 | Polyketide | pyxidicycline A, pyxidicycline B | Pyxidicoccus fallax
BGC0000343.1 |  | 0.21 | NRP | enterobactin | Pseudomonas sp. J465

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001302.1 |  | 0.66 | Other | lomofungin | Streptomyces lomondensis
BGC0001185.1 |  | 0.61 | NRP | bacillibactin | Bacillus velezensis FZB42
BGC0001778.1 |  | 0.61 | Other | showdomycin | Streptomyces showdoensis
BGC0001983.1 |  | 0.59 | Other | triacsins | Kitasatospora aureofaciens
BGC0000401.1 |  | 0.57 | NRP | paenibactin | Paenibacillus elgii B69
BGC0000225.1 |  | 0.55 | Polyketide | frenolicin B | Streptomyces roseofulvus
BGC0001343.1 |  | 0.55 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0000220.1 |  | 0.55 | Polyketide | enterocin | Streptomyces maritimus
BGC0001940.1 |  | 0.54 | Polyketide | pyxidicycline A, pyxidicycline B | Pyxidicoccus fallax
BGC0000343.1 |  | 0.54 | NRP | enterobactin | Pseudomonas sp. J465

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP033033.1 - Region 1 - hserlactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 149,044 - 160,006 nt. (total: 10,963 nt) Show pHMM detection rules used
Region on contig edge.
hserlactone: Autoind_synth

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | hserlactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000329.1 |  | 0.04 | NRP | corpeptin A, corpeptin B | Pseudomonas corrugata

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000329.1 |  | 0.18 | NRP | corpeptin A, corpeptin B | Pseudomonas corrugata

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names