Select genomic region:
Overview
4.1
29.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JALU01000004 (original name was: NZ_JALU01000004.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | ranthipeptide | 43,027 | 64,692 |

NZ_JALU01000029 (original name was: NZ_JALU01000029.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 29.1 | lassopeptide | 11,742 | 31,864 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | ranthipeptide | 43,027 | 64,692 |
Region 29.1 | lassopeptide | 11,742 | 31,864 |

No secondary metabolite regions were found in these records:
  NZ_JALU01000001 (original name was: NZ_JALU01000001.1)
  NZ_JALU01000002 (original name was: NZ_JALU01000002.1)
  NZ_JALU01000003 (original name was: NZ_JALU01000003.1)
  NZ_JALU01000005 (original name was: NZ_JALU01000005.1)
  NZ_JALU01000006 (original name was: NZ_JALU01000006.1)
  NZ_JALU01000007 (original name was: NZ_JALU01000007.1)
  NZ_JALU01000008 (original name was: NZ_JALU01000008.1)
  NZ_JALU01000009 (original name was: NZ_JALU01000009.1)
  NZ_JALU01000010 (original name was: NZ_JALU01000010.1)
  NZ_JALU01000011 (original name was: NZ_JALU01000011.1)
  NZ_JALU01000012 (original name was: NZ_JALU01000012.1)
  NZ_JALU01000013 (original name was: NZ_JALU01000013.1)
  NZ_JALU01000014 (original name was: NZ_JALU01000014.1)
  NZ_JALU01000015 (original name was: NZ_JALU01000015.1)
  NZ_JALU01000016 (original name was: NZ_JALU01000016.1)
  NZ_JALU01000017 (original name was: NZ_JALU01000017.1)
  NZ_JALU01000018 (original name was: NZ_JALU01000018.1)
  NZ_JALU01000019 (original name was: NZ_JALU01000019.1)
  NZ_JALU01000020 (original name was: NZ_JALU01000020.1)
  NZ_JALU01000021 (original name was: NZ_JALU01000021.1)
  NZ_JALU01000022 (original name was: NZ_JALU01000022.1)
  NZ_JALU01000023 (original name was: NZ_JALU01000023.1)
  NZ_JALU01000024 (original name was: NZ_JALU01000024.1)
  NZ_JALU01000025 (original name was: NZ_JALU01000025.1)
  NZ_JALU01000026 (original name was: NZ_JALU01000026.1)
  NZ_JALU01000027 (original name was: NZ_JALU01000027.1)
  NZ_JALU01000028 (original name was: NZ_JALU01000028.1)
  NZ_JALU01000030 (original name was: NZ_JALU01000030.1)

Compact view
c00004_NZ_JALU.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 43,027 - 64,692 nt. (total: 21,666 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000678.1 |  | 0.13 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001887.1 |  | 0.13 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000807.1 |  | 0.12 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0000897.1 |  | 0.11 | Other | dehydrophos | Streptomyces luridus
BGC0001995.1 |  | 0.11 | Terpene | heptelidic acid | Aspergillus oryzae RIB40
BGC0000469.1 |  | 0.09 | RiPP | bottromycin A2 | Streptomyces sp. BC16019
BGC0000653.1 |  | 0.08 | Terpene | pentalenolactone | Streptomyces arenae
BGC0000225.1 |  | 0.07 | Polyketide | frenolicin B | Streptomyces roseofulvus
BGC0001705.1 |  | 0.06 | NRP, Polyketide | nodularin | Nostoc sp. CENA543
BGC0001667.1 |  | 0.06 | NRP, Polyketide | microcystin-LR, microcystin-FR, microcystin-LA, microcystin-LAba, microcystin-LM, microcystin-LV, microcystin-LL | Fischerella sp. CENA161

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000678.1 |  | 0.42 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001887.1 |  | 0.41 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000807.1 |  | 0.40 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0000897.1 |  | 0.38 | Other | dehydrophos | Streptomyces luridus
BGC0001995.1 |  | 0.37 | Terpene | heptelidic acid | Aspergillus oryzae RIB40
BGC0000469.1 |  | 0.33 | RiPP | bottromycin A2 | Streptomyces sp. BC16019
BGC0000653.1 |  | 0.30 | Terpene | pentalenolactone | Streptomyces arenae
BGC0000225.1 |  | 0.29 | Polyketide | frenolicin B | Streptomyces roseofulvus
BGC0001705.1 |  | 0.26 | NRP, Polyketide | nodularin | Nostoc sp. CENA543
BGC0001667.1 |  | 0.25 | NRP, Polyketide | microcystin-LR, microcystin-FR, microcystin-LA, microcystin-LAba, microcystin-LM, microcystin-LV, microcystin-LL | Fischerella sp. CENA161

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00029_NZ_JALU.. - Region 1 - lassopeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 11,742 - 31,864 nt. (total: 20,123 nt) Show pHMM detection rules used
lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Lasso peptides
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

No matches found.

No matches found.

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lasso peptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lassopeptides - No core peptides found.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
Lasso peptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of disulfide bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
No core peptides found.