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Overview
2.1
2.2
2.3

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_KE159653.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | terpene | 633,479 | 655,407 |
Region 2.2 | proteusin | 1,123,750 | 1,143,995 |
Region 2.3 | siderophore | 1,364,104 | 1,381,456 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | terpene | 633,479 | 655,407 |
Region 2.2 | proteusin | 1,123,750 | 1,143,995 |
Region 2.3 | siderophore | 1,364,104 | 1,381,456 |

No secondary metabolite regions were found in these records:
  NZ_KE159652.1
  NZ_KE159654.1
  NZ_KE159655.1
  NZ_KE159656.1

Compact view
NZ_KE159653.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 633,479 - 655,407 nt. (total: 21,929 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000886.1 |  | 0.17 | Other | allylmalonyl-CoA | Streptomyces tsukubensis
BGC0001683.1 |  | 0.14 | Other | N-acyl serinol | Bacillus sp. 2_A_57_CT2
BGC0001783.1 |  | 0.14 | Other | streptonigrin | Streptomyces flocculus
BGC0000670.1 |  | 0.13 | Terpene | thalianol, thaliandiol | Arabidopsis thaliana
BGC0000663.1 |  | 0.12 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0000932.1 |  | 0.11 | Other | tropodithietic acid | Phaeobacter inhibens DSM 17395
BGC0001362.1 |  | 0.11 | Other | tropodithietic acid | Phaeobacter inhibens DSM 17395
BGC0000943.1 |  | 0.11 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000495.1 |  | 0.09 | RiPP | actagardine | Actinoplanes garbadinensis
BGC0001148.1 |  | 0.09 | NRP, RiPP | pheganomycin | Streptomyces cirratus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000886.1 |  | 0.48 | Other | allylmalonyl-CoA | Streptomyces tsukubensis
BGC0001683.1 |  | 0.43 | Other | N-acyl serinol | Bacillus sp. 2_A_57_CT2
BGC0001783.1 |  | 0.43 | Other | streptonigrin | Streptomyces flocculus
BGC0000670.1 |  | 0.41 | Terpene | thalianol, thaliandiol | Arabidopsis thaliana
BGC0000663.1 |  | 0.39 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0000932.1 |  | 0.38 | Other | tropodithietic acid | Phaeobacter inhibens DSM 17395
BGC0001362.1 |  | 0.38 | Other | tropodithietic acid | Phaeobacter inhibens DSM 17395
BGC0000943.1 |  | 0.37 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000495.1 |  | 0.34 | RiPP | actagardine | Actinoplanes garbadinensis
BGC0001148.1 |  | 0.33 | NRP, RiPP | pheganomycin | Streptomyces cirratus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_KE159653.1 - Region 2 - proteusin
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,123,750 - 1,143,995 nt. (total: 20,246 nt) Show pHMM detection rules used
proteusin: (PoyD or TIGR03793)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | proteusin | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000792.1 |  | 0.14 | Saccharide | polysaccharide | Enterococcus faecalis OG1RF
BGC0000506.1 |  | 0.11 | RiPP | entianin | Bacillus subtilis subsp. spizizenii
BGC0001686.1 |  | 0.11 | NRP | N-octanoyl-Met-Phe-H | Clostridium sp. CAG:567

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000792.1 |  | 0.44 | Saccharide | polysaccharide | Enterococcus faecalis OG1RF
BGC0000506.1 |  | 0.38 | RiPP | entianin | Bacillus subtilis subsp. spizizenii
BGC0001686.1 |  | 0.38 | NRP | N-octanoyl-Met-Phe-H | Clostridium sp. CAG:567

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_KE159653.1 - Region 3 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,364,104 - 1,381,456 nt. (total: 17,353 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001478.1 |  | 0.32 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0001572.1 |  | 0.31 | Other | desferrioxamine E | Pantoea agglomerans
BGC0000939.1 |  | 0.28 | Other | aerobactin | Grimontia hollisae
BGC0000942.1 |  | 0.28 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0000295.1 |  | 0.26 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0000853.1 |  | 0.26 | Other | ectoine | Streptomyces anulatus
BGC0000858.1 |  | 0.25 | Other | ectoine | Methylobacter marinus
BGC0000855.1 |  | 0.25 | Other | ectoine | Methylomicrobium kenyense
BGC0000946.1 |  | 0.25 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0000859.1 |  | 0.25 | Other | ectoine | Methylomicrobium alcaliphilum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001478.1 |  | 0.65 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0001572.1 |  | 0.64 | Other | desferrioxamine E | Pantoea agglomerans
BGC0000939.1 |  | 0.62 | Other | aerobactin | Grimontia hollisae
BGC0000942.1 |  | 0.61 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0000295.1 |  | 0.59 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0000853.1 |  | 0.59 | Other | ectoine | Streptomyces anulatus
BGC0000858.1 |  | 0.59 | Other | ectoine | Methylobacter marinus
BGC0000855.1 |  | 0.59 | Other | ectoine | Methylomicrobium kenyense
BGC0000946.1 |  | 0.58 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0000859.1 |  | 0.58 | Other | ectoine | Methylomicrobium alcaliphilum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names