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Overview
1.1
1.2
1.3
1.4
1.5
1.6

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP065682.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | lanthipeptide-class-iii | 1,001,420 | 1,023,915 | funisamine | Polyketide | 5%
Region 2 | ectoine | 1,265,449 | 1,275,850 | ectoine | Other | 75%
Region 3 | terpene | 1,409,516 | 1,430,427 | carotenoid | Terpene | 57%
Region 4 | NAPAA | 3,165,066 | 3,199,007 |
Region 5 | PKS-like,butyrolactone | 3,671,823 | 3,712,908 | marineosin A / marineosin B | Polyketide | 9%
Region 6 | siderophore | 3,933,065 | 3,945,659 |

NZ_CP065682.1 - Region 1 - lanthipeptide-class-iii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,001,420 - 1,023,915 nt. (total: 22,496 nt) Show pHMM detection rules used
lanthipeptide-class-iii: (micKC and not PKS_KS)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Lanthipeptides
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | lanthipeptide-class-iii | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000513.1 |  | 0.27 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000519.1 |  | 0.27 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000501.1 |  | 0.27 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000496.1 |  | 0.27 | RiPP | AmfS | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000551.1 |  | 0.27 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000503.1 |  | 0.26 | RiPP | cinnamycin | Streptomyces cinnamoneus
BGC0000528.1 |  | 0.26 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000553.1 |  | 0.25 | RiPP | SRO15-2212 | Streptomyces filamentosus NRRL 15998
BGC0001850.1 |  | 0.19 | Other (Shikimate-derived) | diazaquinomycin A, diazaquinomycin E, diazaquinomycin F, diazaquinomycin G | Streptomyces sp. F001
BGC0000518.1 |  | 0.19 | RiPP | informatipeptin | Streptomyces viridochromogenes DSM 40736

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000513.1 |  | 0.61 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000519.1 |  | 0.61 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000501.1 |  | 0.61 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000496.1 |  | 0.61 | RiPP | AmfS | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000551.1 |  | 0.61 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000503.1 |  | 0.59 | RiPP | cinnamycin | Streptomyces cinnamoneus
BGC0000528.1 |  | 0.59 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000553.1 |  | 0.59 | RiPP | SRO15-2212 | Streptomyces filamentosus NRRL 15998
BGC0001850.1 |  | 0.51 | Other (Shikimate-derived) | diazaquinomycin A, diazaquinomycin E, diazaquinomycin F, diazaquinomycin G | Streptomyces sp. F001
BGC0000518.1 |  | 0.51 | RiPP | informatipeptin | Streptomyces viridochromogenes DSM 40736

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lanthipeptides - No core peptides found.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
No core peptides found.
NZ_CP065682.1 - Region 2 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,265,449 - 1,275,850 nt. (total: 10,402 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.42 | Other | ectoine | Streptomyces anulatus
BGC0000852.1 |  | 0.38 | Other | ectoine | Sporosarcina pasteurii
BGC0000855.1 |  | 0.33 | Other | ectoine | Methylomicrobium kenyense
BGC0000859.1 |  | 0.33 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000858.1 |  | 0.33 | Other | ectoine | Methylobacter marinus
BGC0000856.1 |  | 0.33 | Other | ectoine | Methylophaga thalassica
BGC0000857.1 |  | 0.27 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.26 | Other | ectoine | Methylarcula marina
BGC0000854.1 |  | 0.25 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000919.1 |  | 0.14 | Other | phaseolotoxin | Pseudomonas syringae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.74 | Other | ectoine | Streptomyces anulatus
BGC0000852.1 |  | 0.70 | Other | ectoine | Sporosarcina pasteurii
BGC0000855.1 |  | 0.66 | Other | ectoine | Methylomicrobium kenyense
BGC0000859.1 |  | 0.66 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000858.1 |  | 0.66 | Other | ectoine | Methylobacter marinus
BGC0000856.1 |  | 0.66 | Other | ectoine | Methylophaga thalassica
BGC0000857.1 |  | 0.60 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.60 | Other | ectoine | Methylarcula marina
BGC0000854.1 |  | 0.59 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000919.1 |  | 0.44 | Other | phaseolotoxin | Pseudomonas syringae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP065682.1 - Region 3 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,409,516 - 1,430,427 nt. (total: 20,912 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000650.1 |  | 0.33 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000648.1 |  | 0.33 | Terpene | carotenoid | Myxococcus xanthus
BGC0000647.1 |  | 0.32 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000644.1 |  | 0.25 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0001227.1 |  | 0.24 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000633.1 |  | 0.24 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001903.1 |  | 0.20 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0000636.1 |  | 0.20 | Terpene | carotenoid | Brevibacterium linens
BGC0001521.1 |  | 0.19 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0000637.1 |  | 0.19 | Terpene | carotenoid | Corynebacterium glutamicum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000650.1 |  | 0.66 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000648.1 |  | 0.66 | Terpene | carotenoid | Myxococcus xanthus
BGC0000647.1 |  | 0.66 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000644.1 |  | 0.59 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0001227.1 |  | 0.57 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000633.1 |  | 0.57 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001903.1 |  | 0.53 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0000636.1 |  | 0.53 | Terpene | carotenoid | Brevibacterium linens
BGC0001521.1 |  | 0.51 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0000637.1 |  | 0.51 | Terpene | carotenoid | Corynebacterium glutamicum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP065682.1 - Region 4 - NAPAA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,165,066 - 3,199,007 nt. (total: 33,942 nt) Show pHMM detection rules used
NAPAA: (AMP-binding and PP-binding and TIGR02353)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NAPAA | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000375.1 |  | 0.21 | NRP | indigoidine | Streptomyces chromofuscus
BGC0000889.1 |  | 0.21 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0000427.1 |  | 0.21 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0001399.1 |  | 0.21 | NRP | fellutamide B | Aspergillus nidulans FGSC A4
BGC0002029.1 |  | 0.19 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.19 | Other | ferroverdin | Streptomyces lunaelactis
BGC0001758.1 |  | 0.18 | NRP | rhizomide A, rhizomide B, rhizomide C | Paraburkholderia rhizoxinica HKI 454
BGC0001844.1 |  | 0.18 | NRP | holrhizin | Paraburkholderia rhizoxinica HKI 454
BGC0001128.1 |  | 0.18 | NRP | luminmide | Photorhabdus laumondii subsp. laumondii TTO1
BGC0001768.1 |  | 0.18 | NRP | sansalvamide | [Nectria] haematococca mpVI 77-13-4

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000375.1 |  | 0.54 | NRP | indigoidine | Streptomyces chromofuscus
BGC0000889.1 |  | 0.54 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0000427.1 |  | 0.53 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0001399.1 |  | 0.53 | NRP | fellutamide B | Aspergillus nidulans FGSC A4
BGC0002029.1 |  | 0.51 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.51 | Other | ferroverdin | Streptomyces lunaelactis
BGC0001758.1 |  | 0.50 | NRP | rhizomide A, rhizomide B, rhizomide C | Paraburkholderia rhizoxinica HKI 454
BGC0001844.1 |  | 0.50 | NRP | holrhizin | Paraburkholderia rhizoxinica HKI 454
BGC0001128.1 |  | 0.50 | NRP | luminmide | Photorhabdus laumondii subsp. laumondii TTO1
BGC0001768.1 |  | 0.50 | NRP | sansalvamide | [Nectria] haematococca mpVI 77-13-4

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 4, location 3165065 - 3199007:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg1_2824: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (25..400): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    Predicted physicochemical class:
      hydrophilic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      gly, ala
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAESIGtVvK
    Nearest Stachelhaus code:
      lys
    Stachelhaus code match:
      80% (moderate)

NZ_CP065682.1 - Region 5 - PKS-like,butyrolactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,671,823 - 3,712,908 nt. (total: 41,086 nt) Show pHMM detection rules used
PKS-like: (t2pks2 or ksIII)
butyrolactone: AfsA

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | PKS-like | butyrolactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0001903.1 |  |  | 0.50 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0001897.1 |  |  | 0.41 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000204.1 |  |  | 0.38 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000275.1 |  |  | 0.37 | Polyketide | tetracenomycin C | Streptomyces glaucescens
BGC0000271.1 |  |  | 0.35 | Polyketide | spore pigment | Streptomyces avermitilis
BGC0001440.1 |  |  | 0.33 | Other | cystargolide A, cystargolide B | Kitasatospora cystarginea
BGC0000836.1 |  |  | 0.32 | Other | APE Ec | Escherichia coli CFT073
BGC0001080.1 |  |  | 0.32 | Other (Phenazine) | endophenazine A, endophenazine B | Streptomyces anulatus
BGC0001480.1 |  |  | 0.32 | Other | tundrenone | Methylobacter tundripaludum 21/22
BGC0000914.1 |  |  | 0.32 | Other | methylenomycin A | Streptomyces coelicolor A3(2)

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001903.1 |  | 0.61 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0001897.1 |  | 0.55 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000204.1 |  | 0.55 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000271.1 |  | 0.54 | Polyketide | spore pigment | Streptomyces avermitilis
BGC0000275.1 |  | 0.54 | Polyketide | tetracenomycin C | Streptomyces glaucescens
BGC0002000.1 |  | 0.51 | Polyketide | setomimycin | Streptomyces aurantiacus JA 4570
BGC0001895.1 |  | 0.51 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0000836.1 |  | 0.51 | Other | APE Ec | Escherichia coli CFT073
BGC0000221.1 |  | 0.50 | Polyketide | erdacin | uncultured soil bacterium V167
BGC0001440.1 |  | 0.50 | Other | cystargolide A, cystargolide B | Kitasatospora cystarginea

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP065682.1 - Region 6 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,933,065 - 3,945,659 nt. (total: 12,595 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001572.1 |  | 0.28 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001478.1 |  | 0.21 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0001453.1 |  | 0.21 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000940.1 |  | 0.21 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0000941.1 |  | 0.20 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000295.1 |  | 0.20 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0000939.1 |  | 0.18 | Other | aerobactin | Grimontia hollisae
BGC0001499.1 |  | 0.17 | Other | aerobactin | Pantoea ananatis
BGC0000703.1 |  | 0.16 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001937.1 |  | 0.16 | Other | tubercidin | Streptomyces tubercidicus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001572.1 |  | 0.62 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001478.1 |  | 0.54 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0001453.1 |  | 0.54 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000940.1 |  | 0.54 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0000941.1 |  | 0.53 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000295.1 |  | 0.52 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0000939.1 |  | 0.49 | Other | aerobactin | Grimontia hollisae
BGC0001499.1 |  | 0.48 | Other | aerobactin | Pantoea ananatis
BGC0000703.1 |  | 0.47 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001937.1 |  | 0.47 | Other | tubercidin | Streptomyces tubercidicus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

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Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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