Select genomic region:
Overview
19.1
37.1
40.1
42.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JRMW01000020 (original name was: NZ_JRMW01000020.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 19.1 | NRPS | 1 | 3,249 |

NZ_JRMW01000038 (original name was: NZ_JRMW01000038.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 37.1 | RRE-containing | 8,140 | 29,678 |

NZ_JRMW01000041 (original name was: NZ_JRMW01000041.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 40.1 | ranthipeptide | 8,428 | 30,081 |

NZ_JRMW01000043 (original name was: NZ_JRMW01000043.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 42.1 | NRPS-like | 1 | 36,721 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 19.1 | NRPS | 1 | 3,249 |
Region 37.1 | RRE-containing | 8,140 | 29,678 |
Region 40.1 | ranthipeptide | 8,428 | 30,081 |
Region 42.1 | NRPS-like | 1 | 36,721 |

No secondary metabolite regions were found in these records:
  NZ_JRMW01000002 (original name was: NZ_JRMW01000002.1)
  NZ_JRMW01000003 (original name was: NZ_JRMW01000003.1)
  NZ_JRMW01000004 (original name was: NZ_JRMW01000004.1)
  NZ_JRMW01000005 (original name was: NZ_JRMW01000005.1)
  NZ_JRMW01000006 (original name was: NZ_JRMW01000006.1)
  NZ_JRMW01000007 (original name was: NZ_JRMW01000007.1)
  NZ_JRMW01000008 (original name was: NZ_JRMW01000008.1)
  NZ_JRMW01000009 (original name was: NZ_JRMW01000009.1)
  NZ_JRMW01000010 (original name was: NZ_JRMW01000010.1)
  NZ_JRMW01000011 (original name was: NZ_JRMW01000011.1)
  NZ_JRMW01000012 (original name was: NZ_JRMW01000012.1)
  NZ_JRMW01000013 (original name was: NZ_JRMW01000013.1)
  NZ_JRMW01000014 (original name was: NZ_JRMW01000014.1)
  NZ_JRMW01000015 (original name was: NZ_JRMW01000015.1)
  NZ_JRMW01000016 (original name was: NZ_JRMW01000016.1)
  NZ_JRMW01000017 (original name was: NZ_JRMW01000017.1)
  NZ_JRMW01000018 (original name was: NZ_JRMW01000018.1)
  NZ_JRMW01000019 (original name was: NZ_JRMW01000019.1)
  NZ_JRMW01000021 (original name was: NZ_JRMW01000021.1)
  NZ_JRMW01000022 (original name was: NZ_JRMW01000022.1)
  NZ_JRMW01000023 (original name was: NZ_JRMW01000023.1)
  NZ_JRMW01000024 (original name was: NZ_JRMW01000024.1)
  NZ_JRMW01000025 (original name was: NZ_JRMW01000025.1)
  NZ_JRMW01000026 (original name was: NZ_JRMW01000026.1)
  NZ_JRMW01000027 (original name was: NZ_JRMW01000027.1)
  NZ_JRMW01000028 (original name was: NZ_JRMW01000028.1)
  NZ_JRMW01000029 (original name was: NZ_JRMW01000029.1)
  NZ_JRMW01000030 (original name was: NZ_JRMW01000030.1)
  NZ_JRMW01000031 (original name was: NZ_JRMW01000031.1)
  NZ_JRMW01000032 (original name was: NZ_JRMW01000032.1)
  NZ_JRMW01000033 (original name was: NZ_JRMW01000033.1)
  NZ_JRMW01000034 (original name was: NZ_JRMW01000034.1)
  NZ_JRMW01000035 (original name was: NZ_JRMW01000035.1)
  NZ_JRMW01000036 (original name was: NZ_JRMW01000036.1)
  NZ_JRMW01000037 (original name was: NZ_JRMW01000037.1)
  NZ_JRMW01000039 (original name was: NZ_JRMW01000039.1)
  NZ_JRMW01000040 (original name was: NZ_JRMW01000040.1)
  NZ_JRMW01000042 (original name was: NZ_JRMW01000042.1)
  NZ_JRMW01000044 (original name was: NZ_JRMW01000044.1)

Compact view
c00019_NZ_JRMW.. - Region 1 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 3,249 nt. (total: 3,249 nt) Show pHMM detection rules used
Region on contig edge.
NRPS: cds(Condensation and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NRPS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001128.1 |  | 0.21 | NRP | luminmide | Photorhabdus laumondii subsp. laumondii TTO1
BGC0000900.1 |  | 0.20 | Other | ferrichrome | Aspergillus oryzae
BGC0001641.1 |  | 0.20 | NRP | kolossin | Photorhabdus laumondii subsp. laumondii TTO1
BGC0001479.1 |  | 0.20 | NRP | anabaenopeptin NZ857, nostamide A | Nostoc punctiforme PCC 73102
BGC0001825.1 |  | 0.20 | NRP | xenematide | Xenorhabdus nematophila AN6/1
BGC0001844.1 |  | 0.20 | NRP | holrhizin | Paraburkholderia rhizoxinica HKI 454
BGC0001758.1 |  | 0.20 | NRP | rhizomide A, rhizomide B, rhizomide C | Paraburkholderia rhizoxinica HKI 454
BGC0001132.1 |  | 0.20 | NRP | xenotetrapeptide | Xenorhabdus nematophila ATCC 19061
BGC0001873.1 |  | 0.20 | NRP | pyrrolizixenamide A | Xenorhabdus szentirmaii DSM 16338
BGC0001251.1 |  | 0.20 | NRP | epichloenin A | Epichloe festucae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001128.1 |  | 0.53 | NRP | luminmide | Photorhabdus laumondii subsp. laumondii TTO1
BGC0000900.1 |  | 0.53 | Other | ferrichrome | Aspergillus oryzae
BGC0001641.1 |  | 0.53 | NRP | kolossin | Photorhabdus laumondii subsp. laumondii TTO1
BGC0001479.1 |  | 0.53 | NRP | anabaenopeptin NZ857, nostamide A | Nostoc punctiforme PCC 73102
BGC0001825.1 |  | 0.53 | NRP | xenematide | Xenorhabdus nematophila AN6/1
BGC0001844.1 |  | 0.52 | NRP | holrhizin | Paraburkholderia rhizoxinica HKI 454
BGC0001758.1 |  | 0.52 | NRP | rhizomide A, rhizomide B, rhizomide C | Paraburkholderia rhizoxinica HKI 454
BGC0001132.1 |  | 0.52 | NRP | xenotetrapeptide | Xenorhabdus nematophila ATCC 19061
BGC0001873.1 |  | 0.52 | NRP | pyrrolizixenamide A | Xenorhabdus szentirmaii DSM 16338
BGC0001251.1 |  | 0.52 | NRP | epichloenin A | Epichloe festucae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 0 - 3249:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (cys)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg19_1: cys
  Search NORINE for peptide: strict or relaxed
  AMP-binding (532..927): cys
  NRPSPredictor2: cys
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      cys
    Small clusters prediction:
      cys
    Single AA prediction:
      cys
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DLYNLSLIWK
    Nearest Stachelhaus code:
      cys
    Stachelhaus code match:
      100% (strong)

c00037_NZ_JRMW.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 8,140 - 29,678 nt. (total: 21,539 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000486.1 |  | 0.16 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000294.1 |  | 0.14 | NRP | acinetobactin | Acinetobacter baumannii
BGC0001928.1 |  | 0.14 | Other | (2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid | Streptomyces sp. MA37
BGC0000703.1 |  | 0.13 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001765.1 |  | 0.13 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0000794.1 |  | 0.13 | Saccharide | S-layer glycan | Geobacillus stearothermophilus
BGC0001887.1 |  | 0.13 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001638.1 |  | 0.13 | RiPP | klebsazolicin | Klebsiella pneumoniae subsp. ozaenae
BGC0000775.1 |  | 0.13 | Saccharide | lipopolysaccharide | Legionella pneumophila
BGC0000572.1 |  | 0.11 | RiPP | capistruin | Burkholderia thailandensis E444

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000486.1 |  | 0.46 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000294.1 |  | 0.43 | NRP | acinetobactin | Acinetobacter baumannii
BGC0001928.1 |  | 0.43 | Other | (2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid | Streptomyces sp. MA37
BGC0000703.1 |  | 0.41 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001765.1 |  | 0.41 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0000794.1 |  | 0.41 | Saccharide | S-layer glycan | Geobacillus stearothermophilus
BGC0001887.1 |  | 0.41 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001638.1 |  | 0.41 | RiPP | klebsazolicin | Klebsiella pneumoniae subsp. ozaenae
BGC0000775.1 |  | 0.41 | Saccharide | lipopolysaccharide | Legionella pneumophila
BGC0000572.1 |  | 0.38 | RiPP | capistruin | Burkholderia thailandensis E444

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00040_NZ_JRMW.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 8,428 - 30,081 nt. (total: 21,654 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001387.1 |  | 0.18 | Other | nucleocidin | Streptomyces calvus
BGC0001314.1 |  | 0.14 | Terpene | tirucalla | Arabidopsis thaliana
BGC0000803.1 |  | 0.13 | Saccharide | GG exopolysaccharide | Lactobacillus rhamnosus GG
BGC0000700.1 |  | 0.13 | Saccharide | istamycin | Streptomyces tenjimariensis
BGC0001521.1 |  | 0.13 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0001122.1 |  | 0.10 | NRP, Polyketide | dihydroisoflavipucine, isoflavipucine | Aspergillus terreus NIH2624
BGC0000877.1 |  | 0.10 | Other | polyoxin A, polyoxin H | Streptomyces cacaoi subsp. asoensis
BGC0000375.1 |  | 0.09 | NRP | indigoidine | Streptomyces chromofuscus
BGC0001591.1 |  | 0.07 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.07 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001387.1 |  | 0.49 | Other | nucleocidin | Streptomyces calvus
BGC0001314.1 |  | 0.43 | Terpene | tirucalla | Arabidopsis thaliana
BGC0000803.1 |  | 0.41 | Saccharide | GG exopolysaccharide | Lactobacillus rhamnosus GG
BGC0000700.1 |  | 0.41 | Saccharide | istamycin | Streptomyces tenjimariensis
BGC0001521.1 |  | 0.41 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0001122.1 |  | 0.35 | NRP, Polyketide | dihydroisoflavipucine, isoflavipucine | Aspergillus terreus NIH2624
BGC0000877.1 |  | 0.35 | Other | polyoxin A, polyoxin H | Streptomyces cacaoi subsp. asoensis
BGC0000375.1 |  | 0.32 | NRP | indigoidine | Streptomyces chromofuscus
BGC0001591.1 |  | 0.28 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.28 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00042_NZ_JRMW.. - Region 1 - NRPS-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 36,721 nt. (total: 36,721 nt) Show pHMM detection rules used
Region on contig edge.
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NRPS-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001444.1 |  | 0.24 | Other | caboxamycin | Streptomyces sp. NTK 937
BGC0001538.1 |  | 0.24 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0000889.1 |  | 0.24 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0001636.1 |  | 0.22 | NRP | KK-1 | Curvularia clavata
BGC0000457.1 |  | 0.22 | NRP | vicibactin | Rhizobium etli CFN 42
BGC0002029.1 |  | 0.22 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.22 | Other | ferroverdin | Streptomyces lunaelactis
BGC0000427.1 |  | 0.22 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0001615.1 |  | 0.22 | NRP | hexose-palythine-serine, hexose-shinorine | Heteroscytonema crispum UCFS10
BGC0001833.1 |  | 0.21 | NRP | icosalide A, icosalide B | Burkholderia gladioli

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001444.1 |  | 0.58 | Other | caboxamycin | Streptomyces sp. NTK 937
BGC0001538.1 |  | 0.58 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0000889.1 |  | 0.57 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0001636.1 |  | 0.55 | NRP | KK-1 | Curvularia clavata
BGC0000457.1 |  | 0.55 | NRP | vicibactin | Rhizobium etli CFN 42
BGC0002029.1 |  | 0.54 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.54 | Other | ferroverdin | Streptomyces lunaelactis
BGC0000427.1 |  | 0.54 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0001615.1 |  | 0.54 | NRP | hexose-palythine-serine, hexose-shinorine | Heteroscytonema crispum UCFS10
BGC0001833.1 |  | 0.54 | NRP | icosalide A, icosalide B | Burkholderia gladioli

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
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NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 0 - 36721:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (cys)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg42_13: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (23..446): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    NOTE: outside applicability domain
    Predicted physicochemical class:
      N/A
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      vAliIGVsaK
    Nearest Stachelhaus code:
      glu
    Stachelhaus code match:
      50% (weak)
ctg42_15: cys
  Search NORINE for peptide: strict or relaxed
  AMP-binding (11..249): cys
  NRPSPredictor2: cys
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      cys
    Small clusters prediction:
      cys
    Single AA prediction:
      cys
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DLYNLSLIWK
    Nearest Stachelhaus code:
      cys
    Stachelhaus code match:
      100% (strong)