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Overview
1.1
1.2
1.3

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP022384.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | arylpolyene | 992,084 | 1,032,819 | berninamycin A | RiPP | 20%
Region 2 | arylpolyene | 1,036,259 | 1,075,725 | flexirubin | Polyketide | 8%
Region 3 | arylpolyene | 1,155,509 | 1,196,729 |

NZ_CP022384.1 - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 992,084 - 1,032,819 nt. (total: 40,736 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001264.1 |  | 0.19 | Polyketide | betaenone A, betaenone B, betaenone C | Phoma betae
BGC0001280.1 |  | 0.19 | Polyketide | betaenone C, betaenone A | Phoma betae
BGC0000913.1 |  | 0.19 | Other | MK-8 | Enterobacter cloacae
BGC0000894.1 |  | 0.16 | Other | citrinin | Monascus aurantiacus
BGC0000509.1 |  | 0.15 | RiPP | epilancin 15x | Staphylococcus epidermidis
BGC0000928.1 |  | 0.15 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.15 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3
BGC0000887.1 |  | 0.15 | Alkaloid | saxitoxin, gonyautoxin 2, gonyautoxin 3, toxin C2, toxin C3, gonyautoxin 5, decarbamoylsaxitoxin, decarbamoylgonyautoxin 2, decarbamoylgonyautoxin 3 | Dolichospermum circinale AWQC131C
BGC0001917.1 |  | 0.15 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens
BGC0001547.1 |  | 0.15 | Terpene | citreohybridonol | Aspergillus stellatus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001264.1 |  | 0.51 | Polyketide | betaenone A, betaenone B, betaenone C | Phoma betae
BGC0001280.1 |  | 0.51 | Polyketide | betaenone C, betaenone A | Phoma betae
BGC0000913.1 |  | 0.51 | Other | MK-8 | Enterobacter cloacae
BGC0000894.1 |  | 0.46 | Other | citrinin | Monascus aurantiacus
BGC0000509.1 |  | 0.46 | RiPP | epilancin 15x | Staphylococcus epidermidis
BGC0000928.1 |  | 0.45 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.45 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3
BGC0000887.1 |  | 0.45 | Alkaloid | saxitoxin, gonyautoxin 2, gonyautoxin 3, toxin C2, toxin C3, gonyautoxin 5, decarbamoylsaxitoxin, decarbamoylgonyautoxin 2, decarbamoylgonyautoxin 3 | Dolichospermum circinale AWQC131C
BGC0001917.1 |  | 0.45 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens
BGC0001547.1 |  | 0.44 | Terpene | citreohybridonol | Aspergillus stellatus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP022384.1 - Region 2 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,036,259 - 1,075,725 nt. (total: 39,467 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000272.1 |  | 0.18 | Polyketide | spore pigment | Streptomyces collinus
BGC0000840.1 |  | 0.18 | Other | xanthomonadin I | Xanthomonas oryzae pv. oryzae
BGC0000248.1 |  | 0.17 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000234.1 |  | 0.17 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000231.1 |  | 0.17 | Polyketide | griseusin | Streptomyces griseus
BGC0001197.1 |  | 0.16 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000228.1 |  | 0.16 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0001366.1 |  | 0.16 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000044.1 |  | 0.16 | Polyketide | dawenol | Stigmatella aurantiaca DW4/3-1
BGC0001343.1 |  | 0.15 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000272.1 |  | 0.50 | Polyketide | spore pigment | Streptomyces collinus
BGC0000840.1 |  | 0.49 | Other | xanthomonadin I | Xanthomonas oryzae pv. oryzae
BGC0000248.1 |  | 0.48 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000234.1 |  | 0.48 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000231.1 |  | 0.47 | Polyketide | griseusin | Streptomyces griseus
BGC0001197.1 |  | 0.47 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000228.1 |  | 0.47 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0001366.1 |  | 0.47 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000044.1 |  | 0.46 | Polyketide | dawenol | Stigmatella aurantiaca DW4/3-1
BGC0001343.1 |  | 0.45 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP022384.1 - Region 3 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,155,509 - 1,196,729 nt. (total: 41,221 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001987.1 |  | 0.16 | Polyketide | koreenceine A, koreenceine B, koreenceine C, koreenceine D | Pseudomonas koreensis
BGC0001138.1 |  | 0.15 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans
BGC0001314.1 |  | 0.14 | Terpene | tirucalla | Arabidopsis thaliana
BGC0001400.1 |  | 0.13 | Polyketide | citreoviridin | Aspergillus terreus NIH2624
BGC0001150.1 |  | 0.13 | Polyketide | pamamycin-607 | Streptomyces alboniger
BGC0001244.1 |  | 0.11 | Polyketide | (-)-Mellein | Parastagonospora nodorum
BGC0001273.1 |  | 0.11 | Polyketide | asperlactone | Aspergillus ochraceus
BGC0001275.1 |  | 0.11 | Polyketide | 6-methylsalicyclic acid | Glarea lozoyensis
BGC0001276.1 |  | 0.11 | Polyketide | 6-methylsalicyclic acid | Aspergillus terreus
BGC0000037.1 |  | 0.11 | Polyketide | cichorine | Aspergillus nidulans FGSC A4

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001987.1 |  | 0.47 | Polyketide | koreenceine A, koreenceine B, koreenceine C, koreenceine D | Pseudomonas koreensis
BGC0001138.1 |  | 0.45 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans
BGC0001314.1 |  | 0.43 | Terpene | tirucalla | Arabidopsis thaliana
BGC0001400.1 |  | 0.42 | Polyketide | citreoviridin | Aspergillus terreus NIH2624
BGC0001150.1 |  | 0.41 | Polyketide | pamamycin-607 | Streptomyces alboniger
BGC0001244.1 |  | 0.38 | Polyketide | (-)-Mellein | Parastagonospora nodorum
BGC0001273.1 |  | 0.37 | Polyketide | asperlactone | Aspergillus ochraceus
BGC0001275.1 |  | 0.37 | Polyketide | 6-methylsalicyclic acid | Glarea lozoyensis
BGC0001276.1 |  | 0.37 | Polyketide | 6-methylsalicyclic acid | Aspergillus terreus
BGC0000037.1 |  | 0.37 | Polyketide | cichorine | Aspergillus nidulans FGSC A4

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names