GCF_000732635.1_CloSul1.0_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_JPMD01000031 (original name was: NZ_JPMD01000031.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	RRE-containing	7,598	27,993

NZ_JPMD01000035 (original name was: NZ_JPMD01000035.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	ranthipeptide,thiopeptide	54,001	93,860

NZ_JPMD01000038 (original name was: NZ_JPMD01000038.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	cyclic-lactone-autoinducer	34,935	55,654

Region	Type	From	To	Similarity
Region 31.1	RRE-containing	7,598	27,993
Region 35.1	ranthipeptide,thiopeptide	54,001	93,860
Region 38.1	cyclic-lactone-autoinducer	34,935	55,654

No secondary metabolite regions were found in these records:: NZ_JPMD01000001 (original name was: NZ_JPMD01000001.1); NZ_JPMD01000002 (original name was: NZ_JPMD01000002.1); NZ_JPMD01000003 (original name was: NZ_JPMD01000003.1); NZ_JPMD01000004 (original name was: NZ_JPMD01000004.1); NZ_JPMD01000005 (original name was: NZ_JPMD01000005.1); NZ_JPMD01000006 (original name was: NZ_JPMD01000006.1); NZ_JPMD01000007 (original name was: NZ_JPMD01000007.1); NZ_JPMD01000008 (original name was: NZ_JPMD01000008.1); NZ_JPMD01000009 (original name was: NZ_JPMD01000009.1); NZ_JPMD01000010 (original name was: NZ_JPMD01000010.1); NZ_JPMD01000011 (original name was: NZ_JPMD01000011.1); NZ_JPMD01000012 (original name was: NZ_JPMD01000012.1); NZ_JPMD01000013 (original name was: NZ_JPMD01000013.1); NZ_JPMD01000014 (original name was: NZ_JPMD01000014.1); NZ_JPMD01000015 (original name was: NZ_JPMD01000015.1); NZ_JPMD01000016 (original name was: NZ_JPMD01000016.1); NZ_JPMD01000017 (original name was: NZ_JPMD01000017.1); NZ_JPMD01000018 (original name was: NZ_JPMD01000018.1); NZ_JPMD01000019 (original name was: NZ_JPMD01000019.1); NZ_JPMD01000020 (original name was: NZ_JPMD01000020.1); NZ_JPMD01000021 (original name was: NZ_JPMD01000021.1); NZ_JPMD01000022 (original name was: NZ_JPMD01000022.1); NZ_JPMD01000023 (original name was: NZ_JPMD01000023.1); NZ_JPMD01000024 (original name was: NZ_JPMD01000024.1); NZ_JPMD01000025 (original name was: NZ_JPMD01000025.1); NZ_JPMD01000026 (original name was: NZ_JPMD01000026.1); NZ_JPMD01000027 (original name was: NZ_JPMD01000027.1); NZ_JPMD01000028 (original name was: NZ_JPMD01000028.1); NZ_JPMD01000029 (original name was: NZ_JPMD01000029.1); NZ_JPMD01000030 (original name was: NZ_JPMD01000030.1); NZ_JPMD01000032 (original name was: NZ_JPMD01000032.1); NZ_JPMD01000033 (original name was: NZ_JPMD01000033.1); NZ_JPMD01000034 (original name was: NZ_JPMD01000034.1); NZ_JPMD01000036 (original name was: NZ_JPMD01000036.1); NZ_JPMD01000037 (original name was: NZ_JPMD01000037.1); NZ_JPMD01000039 (original name was: NZ_JPMD01000039.1); NZ_JPMD01000040 (original name was: NZ_JPMD01000040.1); NZ_JPMD01000041 (original name was: NZ_JPMD01000041.1); NZ_JPMD01000042 (original name was: NZ_JPMD01000042.1); NZ_JPMD01000043 (original name was: NZ_JPMD01000043.1); NZ_JPMD01000044 (original name was: NZ_JPMD01000044.1); NZ_JPMD01000045 (original name was: NZ_JPMD01000045.1); NZ_JPMD01000046 (original name was: NZ_JPMD01000046.1); NZ_JPMD01000047 (original name was: NZ_JPMD01000047.1); NZ_JPMD01000048 (original name was: NZ_JPMD01000048.1); NZ_JPMD01000049 (original name was: NZ_JPMD01000049.1); NZ_JPMD01000050 (original name was: NZ_JPMD01000050.1); NZ_JPMD01000051 (original name was: NZ_JPMD01000051.1); NZ_JPMD01000052 (original name was: NZ_JPMD01000052.1); NZ_JPMD01000053 (original name was: NZ_JPMD01000053.1); NZ_JPMD01000054 (original name was: NZ_JPMD01000054.1); NZ_JPMD01000055 (original name was: NZ_JPMD01000055.1); NZ_JPMD01000056 (original name was: NZ_JPMD01000056.1); NZ_JPMD01000057 (original name was: NZ_JPMD01000057.1); NZ_JPMD01000058 (original name was: NZ_JPMD01000058.1); NZ_JPMD01000059 (original name was: NZ_JPMD01000059.1); NZ_JPMD01000060 (original name was: NZ_JPMD01000060.1); NZ_JPMD01000061 (original name was: NZ_JPMD01000061.1); NZ_JPMD01000062 (original name was: NZ_JPMD01000062.1); NZ_JPMD01000063 (original name was: NZ_JPMD01000063.1); NZ_JPMD01000064 (original name was: NZ_JPMD01000064.1); NZ_JPMD01000065 (original name was: NZ_JPMD01000065.1); NZ_JPMD01000066 (original name was: NZ_JPMD01000066.1); NZ_JPMD01000067 (original name was: NZ_JPMD01000067.1); NZ_JPMD01000068 (original name was: NZ_JPMD01000068.1); NZ_JPMD01000069 (original name was: NZ_JPMD01000069.1); NZ_JPMD01000070 (original name was: NZ_JPMD01000070.1); NZ_JPMD01000071 (original name was: NZ_JPMD01000071.1); NZ_JPMD01000072 (original name was: NZ_JPMD01000072.1); NZ_JPMD01000073 (original name was: NZ_JPMD01000073.1); NZ_JPMD01000078 (original name was: NZ_JPMD01000078.1); NZ_JPMD01000079 (original name was: NZ_JPMD01000079.1); NZ_JPMD01000081 (original name was: NZ_JPMD01000081.1); NZ_JPMD01000082 (original name was: NZ_JPMD01000082.1); NZ_JPMD01000083 (original name was: NZ_JPMD01000083.1); NZ_JPMD01000089 (original name was: NZ_JPMD01000089.1)

Compact view

c00031_NZ_JPMD.. - Region 1 - RRE-containing

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Location: 7,598 - 27,993 nt. (total: 20,396 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000813.1	0.09	Alkaloid	K-252a	Nonomuraea longicatena
BGC0001435.1	0.06	NRP, Polyketide	ikarugamycin	Streptomyces sp. ZJ306
BGC0000814.1	0.05	Alkaloid	K-252a	Nonomuraea longicatena

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000813.1	0.33	Alkaloid	K-252a	Nonomuraea longicatena
BGC0001435.1	0.25	NRP, Polyketide	ikarugamycin	Streptomyces sp. ZJ306
BGC0000814.1	0.22	Alkaloid	K-252a	Nonomuraea longicatena

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00035_NZ_JPMD.. - Region 1 - ranthipeptide,thiopeptide

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Location: 54,001 - 93,860 nt. (total: 39,860 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))
thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.34	Other	nucleocidin	Streptomyces calvus
BGC0001285.1	0.34	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0001889.1	0.32	RiPP	fusilassin	Thermobifida fusca YX
BGC0001356.1	0.31	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0001634.1	0.31	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0001645.1	0.31	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0000540.1	0.31	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0001412.1	0.31	Saccharide	polysaccharide C	Bacteroides fragilis
BGC0000538.1	0.31	RiPP	nisin Z	Lactococcus lactis
BGC0001494.1	0.30	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.49	Other	nucleocidin	Streptomyces calvus
BGC0001285.1	0.48	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0001889.1	0.46	RiPP	fusilassin	Thermobifida fusca YX
BGC0001356.1	0.46	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0001634.1	0.46	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0001645.1	0.46	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0000540.1	0.46	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0001412.1	0.46	Saccharide	polysaccharide C	Bacteroides fragilis
BGC0000538.1	0.46	RiPP	nisin Z	Lactococcus lactis
BGC0001494.1	0.45	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306

Similar known gene clusters

No matches found.

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Thiopeptides

Core peptide predictions

No core peptides found.

c00038_NZ_JPMD.. - Region 1 - cyclic-lactone-autoinducer

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Location: 34,935 - 55,654 nt. (total: 20,720 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000844.1	0.13	Other	clavulanic acid	Streptomyces clavuligerus
BGC0000488.1	0.11	RiPP	circularin A	Clostridium beijerinckii
BGC0000453.1	0.08	NRP	valinomycin	Streptomyces tsusimaensis
BGC0000845.1	0.06	Other (Non-NRP beta-lactam)	clavulanic acid	Streptomyces clavuligerus ATCC 27064

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000844.1	0.42	Other	clavulanic acid	Streptomyces clavuligerus
BGC0000488.1	0.38	RiPP	circularin A	Clostridium beijerinckii
BGC0000453.1	0.31	NRP	valinomycin	Streptomyces tsusimaensis
BGC0000845.1	0.26	Other (Non-NRP beta-lactam)	clavulanic acid	Streptomyces clavuligerus ATCC 27064

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names