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Overview
14.1
16.1

### Identified secondary metabolite regions using strictness 'relaxed'

c00014_NZ_CABK.. (original name was: NZ_CABKPU010000014.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 14.1 | ranthipeptide | 14,057 | 47,453 |

c00016_NZ_CABK.. (original name was: NZ_CABKPU010000016.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 16.1 | arylpolyene | 160,417 | 201,637 | flexirubin | Other | 8%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 14.1 | ranthipeptide | 14,057 | 47,453 |
Region 16.1 | arylpolyene | 160,417 | 201,637 | flexirubin | Other | 8%

No secondary metabolite regions were found in these records:
  c00001_NZ_CABK.. (original name was: NZ_CABKPU010000001.1)
  c00002_NZ_CABK.. (original name was: NZ_CABKPU010000002.1)
  c00003_NZ_CABK.. (original name was: NZ_CABKPU010000003.1)
  c00004_NZ_CABK.. (original name was: NZ_CABKPU010000004.1)
  c00005_NZ_CABK.. (original name was: NZ_CABKPU010000005.1)
  c00006_NZ_CABK.. (original name was: NZ_CABKPU010000006.1)
  c00007_NZ_CABK.. (original name was: NZ_CABKPU010000007.1)
  c00008_NZ_CABK.. (original name was: NZ_CABKPU010000008.1)
  c00009_NZ_CABK.. (original name was: NZ_CABKPU010000009.1)
  c00010_NZ_CABK.. (original name was: NZ_CABKPU010000010.1)
  c00011_NZ_CABK.. (original name was: NZ_CABKPU010000011.1)
  c00012_NZ_CABK.. (original name was: NZ_CABKPU010000012.1)
  c00013_NZ_CABK.. (original name was: NZ_CABKPU010000013.1)
  c00015_NZ_CABK.. (original name was: NZ_CABKPU010000015.1)
  c00017_NZ_CABK.. (original name was: NZ_CABKPU010000017.1)
  c00018_NZ_CABK.. (original name was: NZ_CABKPU010000018.1)
  c00019_NZ_CABK.. (original name was: NZ_CABKPU010000019.1)

Compact view
c00014_NZ_CABK.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 14,057 - 47,453 nt. (total: 33,397 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000644.1 |  | 0.21 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0001862.1 |  | 0.20 | RiPP | geocillicin | Aeribacillus pallidus
BGC0001930.1 |  | 0.20 | RiPP | pallidocin | Aeribacillus pallidus
BGC0000785.1 |  | 0.18 | Saccharide | O-antigen | Burkholderia mallei
BGC0000782.1 |  | 0.18 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b
BGC0000599.1 |  | 0.17 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000781.1 |  | 0.16 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0001525.1 |  | 0.16 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0001526.1 |  | 0.16 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000521.1 |  | 0.16 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000644.1 |  | 0.54 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0001862.1 |  | 0.53 | RiPP | geocillicin | Aeribacillus pallidus
BGC0001930.1 |  | 0.53 | RiPP | pallidocin | Aeribacillus pallidus
BGC0000785.1 |  | 0.50 | Saccharide | O-antigen | Burkholderia mallei
BGC0000782.1 |  | 0.50 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b
BGC0000599.1 |  | 0.48 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000781.1 |  | 0.47 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0001525.1 |  | 0.47 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0001526.1 |  | 0.47 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000521.1 |  | 0.47 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00016_NZ_CABK.. - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 160,417 - 201,637 nt. (total: 41,221 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002008.1 |  | 0.21 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000888.1 |  | 0.21 | Other | bacilysin | Bacillus sp. CS93
BGC0001197.1 |  | 0.20 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000837.1 |  | 0.18 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0001184.1 |  | 0.18 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000204.1 |  | 0.18 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000787.1 |  | 0.17 | Saccharide | O-antigen | Escherichia coli
BGC0001895.1 |  | 0.16 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0001988.1 |  | 0.16 | Polyketide | neosartorin | Aspergillus novofumigatus IBT 16806
BGC0001275.1 |  | 0.16 | Polyketide | 6-methylsalicyclic acid | Glarea lozoyensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002008.1 |  | 0.54 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000888.1 |  | 0.54 | Other | bacilysin | Bacillus sp. CS93
BGC0001197.1 |  | 0.53 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000837.1 |  | 0.50 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0001184.1 |  | 0.50 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000204.1 |  | 0.49 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000787.1 |  | 0.48 | Saccharide | O-antigen | Escherichia coli
BGC0001895.1 |  | 0.46 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0001988.1 |  | 0.46 | Polyketide | neosartorin | Aspergillus novofumigatus IBT 16806
BGC0001275.1 |  | 0.46 | Polyketide | 6-methylsalicyclic acid | Glarea lozoyensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names