GCF_902387955.1_UHGG_MGYG-HGUT-02517_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_LR699011.1

Region	Type	From	To
Region 1	RRE-containing	1,882,641	1,902,156
Region 2	RRE-containing	1,906,856	1,926,289
Region 3	ranthipeptide	2,544,441	2,566,060
Region 4	cyclic-lactone-autoinducer	3,452,484	3,487,784

NZ_LR699011.1 - Region 1 - RRE-containing

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Location: 1,882,641 - 1,902,156 nt. (total: 19,516 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001779.1	0.24	RiPP	siamycin	Streptomyces nodosus
BGC0001551.1	0.23	RiPP	citrulassin E	Streptomyces glaucescens
BGC0001526.1	0.21	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001655.1	0.17	RiPP	LP2006	Nocardiopsis alba DSM 43377
BGC0001525.1	0.17	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001496.1	0.16	RiPP	actinokineosin	Actinokineospora spheciospongiae
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000626.1	0.16	RiPP	thuricin	Bacillus thuringiensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001779.1	0.57	RiPP	siamycin	Streptomyces nodosus
BGC0001551.1	0.56	RiPP	citrulassin E	Streptomyces glaucescens
BGC0001526.1	0.54	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001655.1	0.49	RiPP	LP2006	Nocardiopsis alba DSM 43377
BGC0001525.1	0.49	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001496.1	0.47	RiPP	actinokineosin	Actinokineospora spheciospongiae
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000487.1	0.46	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000626.1	0.46	RiPP	thuricin	Bacillus thuringiensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_LR699011.1 - Region 2 - RRE-containing

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Location: 1,906,856 - 1,926,289 nt. (total: 19,434 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.26	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0001594.1	0.24	Alkaloid	fischerindole L	Fischerella muscicola UTEX 1829
BGC0001501.1	0.19	Alkaloid	ambiguine P	Fischerella sp. TAU
BGC0001595.1	0.19	Alkaloid	fischerindole	Fischerella sp. SAG 46.79
BGC0001126.1	0.18	Terpene, Alkaloid	12-epi-hapalindole J isonitrile, ambiguine A isonitrile, ambiguine B isonitrile, ambiguine C isonitrile, ambiguine D isonitrile, ambiguine E isonitrile, ambiguine K isonitrile, ambiguine L isonitrile, ambiguine I isonitrile, ambiguine J isonitrile	Fischerella ambigua UTEX 1903
BGC0001612.1	0.18	Alkaloid	ambiguine H isonitrile	Fischerella ambigua UTEX 1903
BGC0001664.1	0.17	Terpene	merosterol	Scytonema sp. PCC 10023
BGC0001140.1	0.16	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0000663.1	0.16	Terpene	hopene	Streptomyces coelicolor A3(2)
BGC0001156.1	0.16	Terpene	platencin	Streptomyces platensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.60	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0001594.1	0.57	Alkaloid	fischerindole L	Fischerella muscicola UTEX 1829
BGC0001501.1	0.52	Alkaloid	ambiguine P	Fischerella sp. TAU
BGC0001595.1	0.51	Alkaloid	fischerindole	Fischerella sp. SAG 46.79
BGC0001126.1	0.50	Terpene, Alkaloid	12-epi-hapalindole J isonitrile, ambiguine A isonitrile, ambiguine B isonitrile, ambiguine C isonitrile, ambiguine D isonitrile, ambiguine E isonitrile, ambiguine K isonitrile, ambiguine L isonitrile, ambiguine I isonitrile, ambiguine J isonitrile	Fischerella ambigua UTEX 1903
BGC0001612.1	0.50	Alkaloid	ambiguine H isonitrile	Fischerella ambigua UTEX 1903
BGC0001664.1	0.49	Terpene	merosterol	Scytonema sp. PCC 10023
BGC0001140.1	0.46	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0000663.1	0.46	Terpene	hopene	Streptomyces coelicolor A3(2)
BGC0001156.1	0.46	Terpene	platencin	Streptomyces platensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_LR699011.1 - Region 3 - ranthipeptide

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Location: 2,544,441 - 2,566,060 nt. (total: 21,620 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.17	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000571.1	0.16	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000519.1	0.16	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000513.1	0.16	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000548.1	0.16	RiPP	salivaricin A	Streptococcus salivarius
BGC0000551.1	0.16	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000518.1	0.16	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans
BGC0001120.1	0.16	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.48	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000571.1	0.47	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000519.1	0.46	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000501.1	0.46	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000513.1	0.46	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000548.1	0.46	RiPP	salivaricin A	Streptococcus salivarius
BGC0000551.1	0.46	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000518.1	0.46	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736
BGC0000617.1	0.46	RiPP	coagulin	Bacillus coagulans
BGC0001120.1	0.46	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_LR699011.1 - Region 4 - cyclic-lactone-autoinducer

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Location: 3,452,484 - 3,487,784 nt. (total: 35,301 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	cyclic-lactone-autoinducer	Similarity score	Type	Compound(s)	Organism
BGC0001133.1		0.09	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0001133.1		0.33	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names