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Overview
1.1
1.2
1.3
1.4
1.5

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP031196.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 104,103 | 124,008 |
Region 1.2 | T3PKS | 376,963 | 418,132 | capsular polysaccharide | Saccharide:Exopolysaccharide | 3%
Region 1.3 | siderophore | 761,844 | 776,833 | staphyloferrin A | Other:Non-NRP siderophore | 100%
Region 1.4 | cyclic-lactone-autoinducer | 905,401 | 926,134 | kijanimicin | Polyketide | 4%
Region 1.5 | terpene | 1,222,384 | 1,243,202 | heme D1 | Other | 11%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 104,103 | 124,008 |
Region 1.2 | T3PKS | 376,963 | 418,132 | capsular polysaccharide | Saccharide:Exopolysaccharide | 3%
Region 1.3 | siderophore | 761,844 | 776,833 | staphyloferrin A | Other:Non-NRP siderophore | 100%
Region 1.4 | cyclic-lactone-autoinducer | 905,401 | 926,134 | kijanimicin | Polyketide | 4%
Region 1.5 | terpene | 1,222,384 | 1,243,202 | heme D1 | Other | 11%

No secondary metabolite regions were found in these records:
  NZ_CP031197.1

Compact view
NZ_CP031196.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 104,103 - 124,008 nt. (total: 19,906 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.32 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000645.1 |  | 0.23 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000648.1 |  | 0.23 | Terpene | carotenoid | Myxococcus xanthus
BGC0000636.1 |  | 0.22 | Terpene | carotenoid | Brevibacterium linens
BGC0001227.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0001456.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000633.1 |  | 0.20 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000664.1 |  | 0.20 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000646.1 |  | 0.19 | Terpene | β-carotein | uncultured bacterium
BGC0000769.1 |  | 0.16 | Saccharide | glycopeptidolipid | Mycobacterium avium subsp. hominissuis A5

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.65 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000645.1 |  | 0.56 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000648.1 |  | 0.56 | Terpene | carotenoid | Myxococcus xanthus
BGC0000636.1 |  | 0.56 | Terpene | carotenoid | Brevibacterium linens
BGC0001227.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0001456.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000633.1 |  | 0.52 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000664.1 |  | 0.52 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000646.1 |  | 0.51 | Terpene | β-carotein | uncultured bacterium
BGC0000769.1 |  | 0.47 | Saccharide | glycopeptidolipid | Mycobacterium avium subsp. hominissuis A5

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP031196.1 - Region 2 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 376,963 - 418,132 nt. (total: 41,170 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000286.1 |  | 0.22 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000867.1 |  | 0.17 | Other | polyhydroxyalkanoic acids | Ectothiorhodospira shaposhnikovii
BGC0000255.1 |  | 0.17 | Polyketide | pederin | Uncultured bacterium
BGC0000866.1 |  | 0.17 | Other | polyhydroxyalkanoate | Burkholderia sp. DSM 9242
BGC0001104.1 |  | 0.16 | NRP, Polyketide | myxovirescin A1 | Myxococcus xanthus DK 1622
BGC0000679.1 |  | 0.16 | Terpene | diazepinomicin | Micromonospora sp. M42
BGC0001739.1 |  | 0.16 | Other | phosphonoacetic Acid | Streptomyces sp. NRRL F-525
BGC0000205.1 |  | 0.16 | Polyketide | bryostatin | Candidatus Endobugula sertula
BGC0000934.1 |  | 0.16 | Other (Phenazine) | 5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G | Kitasatospora sp. HKI 714
BGC0000922.1 |  | 0.15 | Other | pseudomonas quinolone signal (PQS) | Pseudomonas aeruginosa PAO1

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000286.1 |  | 0.55 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000867.1 |  | 0.48 | Other | polyhydroxyalkanoic acids | Ectothiorhodospira shaposhnikovii
BGC0000255.1 |  | 0.48 | Polyketide | pederin | Uncultured bacterium
BGC0000866.1 |  | 0.48 | Other | polyhydroxyalkanoate | Burkholderia sp. DSM 9242
BGC0001104.1 |  | 0.47 | NRP, Polyketide | myxovirescin A1 | Myxococcus xanthus DK 1622
BGC0000679.1 |  | 0.47 | Terpene | diazepinomicin | Micromonospora sp. M42
BGC0001739.1 |  | 0.47 | Other | phosphonoacetic Acid | Streptomyces sp. NRRL F-525
BGC0000205.1 |  | 0.46 | Polyketide | bryostatin | Candidatus Endobugula sertula
BGC0000934.1 |  | 0.46 | Other (Phenazine) | 5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G | Kitasatospora sp. HKI 714
BGC0000922.1 |  | 0.46 | Other | pseudomonas quinolone signal (PQS) | Pseudomonas aeruginosa PAO1

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP031196.1 - Region 3 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 761,844 - 776,833 nt. (total: 14,990 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000944.1 |  | 0.54 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000939.1 |  | 0.31 | Other | aerobactin | Grimontia hollisae
BGC0001870.1 |  | 0.22 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000947.1 |  | 0.19 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000883.1 |  | 0.17 | Other | arginomycin | Streptomyces arginensis
BGC0000943.1 |  | 0.15 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001767.1 |  | 0.09 | NRP | salinichelins | Salinispora pacifica CNY331
BGC0000708.1 |  | 0.09 | Saccharide | lividomycin | Streptomyces lividus
BGC0000325.1 |  | 0.08 | NRP | coelichelin | Streptomyces coelicolor A3(2)
BGC0001211.1 |  | 0.08 | NRP | albachelin | Amycolatopsis alba DSM 44262

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000944.1 |  | 0.81 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000939.1 |  | 0.64 | Other | aerobactin | Grimontia hollisae
BGC0001870.1 |  | 0.55 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000947.1 |  | 0.51 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000883.1 |  | 0.48 | Other | arginomycin | Streptomyces arginensis
BGC0000943.1 |  | 0.44 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001767.1 |  | 0.33 | NRP | salinichelins | Salinispora pacifica CNY331
BGC0000708.1 |  | 0.32 | Saccharide | lividomycin | Streptomyces lividus
BGC0000325.1 |  | 0.32 | NRP | coelichelin | Streptomyces coelicolor A3(2)
BGC0001211.1 |  | 0.31 | NRP | albachelin | Amycolatopsis alba DSM 44262

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP031196.1 - Region 4 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 905,401 - 926,134 nt. (total: 20,734 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000207.1 |  | 0.13 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001687.1 |  | 0.13 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSL12
BGC0000540.1 |  | 0.13 | RiPP | paenibacillin | Paenibacillus polymyxa OSY-DF
BGC0000624.1 |  | 0.09 | RiPP | salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide | Lactobacillus salivarius
BGC0001053.1 |  | 0.08 | NRP, Polyketide | tubulysin A | Archangium disciforme
BGC0001836.1 |  | 0.07 | Polyketide | tartrolon D, tartrolon F, tartrolon G | Gynuella sunshinyii YC6258
BGC0001130.1 |  | 0.07 | NRP, Polyketide | fabclavine Ia | Xenorhabdus budapestensis
BGC0001056.1 |  | 0.06 | NRP, Polyketide | zeamine, zeamine I, zeamine II, prezeamine, prezeamine I | Serratia plymuthica RVH1
BGC0000082.1 |  | 0.06 | Polyketide | kijanimicin | Actinomadura kijaniata
BGC0001700.1 |  | 0.05 | Polyketide | niphimycins C-E | Streptomyces sp. IMB7-145

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000207.1 |  | 0.42 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001687.1 |  | 0.42 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSL12
BGC0000540.1 |  | 0.41 | RiPP | paenibacillin | Paenibacillus polymyxa OSY-DF
BGC0000624.1 |  | 0.33 | RiPP | salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide | Lactobacillus salivarius
BGC0001053.1 |  | 0.30 | NRP, Polyketide | tubulysin A | Archangium disciforme
BGC0001836.1 |  | 0.29 | Polyketide | tartrolon D, tartrolon F, tartrolon G | Gynuella sunshinyii YC6258
BGC0001130.1 |  | 0.27 | NRP, Polyketide | fabclavine Ia | Xenorhabdus budapestensis
BGC0001056.1 |  | 0.24 | NRP, Polyketide | zeamine, zeamine I, zeamine II, prezeamine, prezeamine I | Serratia plymuthica RVH1
BGC0000082.1 |  | 0.24 | Polyketide | kijanimicin | Actinomadura kijaniata
BGC0001700.1 |  | 0.22 | Polyketide | niphimycins C-E | Streptomyces sp. IMB7-145

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP031196.1 - Region 5 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,222,384 - 1,243,202 nt. (total: 20,819 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000859.1 |  | 0.23 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0001685.1 |  | 0.18 | Other | N-acyloxyacyl lysine | Raoultella ornithinolytica 10-5246
BGC0000854.1 |  | 0.18 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000698.1 |  | 0.14 | Saccharide | hygromycin A | Streptomyces hygroscopicus
BGC0000906.1 |  | 0.13 | Other | heme D1 | Heliophilum fasciatum
BGC0000905.1 |  | 0.13 | Other | heme D1 | Heliobacillus mobilis
BGC0001090.1 |  | 0.06 | NRP, Polyketide | bacillomycin D | Bacillus velezensis FZB42
BGC0001098.1 |  | 0.06 | NRP, Polyketide | iturin | Bacillus subtilis
BGC0001221.1 |  | 0.05 | Other (Phenazine) | marinophenazine A, phenaziterpene A | Streptomyces sp. CNQ-509
BGC0001103.1 |  | 0.05 | NRP, Polyketide | mycosubtilin | Bacillus subtilis subsp. spizizenii ATCC 6633

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000859.1 |  | 0.56 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0001685.1 |  | 0.50 | Other | N-acyloxyacyl lysine | Raoultella ornithinolytica 10-5246
BGC0000854.1 |  | 0.49 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000698.1 |  | 0.43 | Saccharide | hygromycin A | Streptomyces hygroscopicus
BGC0000906.1 |  | 0.41 | Other | heme D1 | Heliophilum fasciatum
BGC0000905.1 |  | 0.41 | Other | heme D1 | Heliobacillus mobilis
BGC0001090.1 |  | 0.26 | NRP, Polyketide | bacillomycin D | Bacillus velezensis FZB42
BGC0001098.1 |  | 0.26 | NRP, Polyketide | iturin | Bacillus subtilis
BGC0001221.1 |  | 0.23 | Other (Phenazine) | marinophenazine A, phenaziterpene A | Streptomyces sp. CNQ-509
BGC0001103.1 |  | 0.23 | NRP, Polyketide | mycosubtilin | Bacillus subtilis subsp. spizizenii ATCC 6633

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names