Select genomic region:
Overview
49.1
131.1
153.1
187.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LNAM01000049 (original name was: NZ_LNAM01000049.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 49.1 | cyclic-lactone-autoinducer | 1 | 2,910 |

NZ_LNAM01000165 (original name was: NZ_LNAM01000165.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 131.1 | cyclic-lactone-autoinducer | 1 | 14,336 |

NZ_LNAM01000187 (original name was: NZ_LNAM01000187.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 153.1 | ranthipeptide | 513 | 18,540 |

NZ_LNAM01000221 (original name was: NZ_LNAM01000221.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 187.1 | RRE-containing | 1 | 9,309 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 49.1 | cyclic-lactone-autoinducer | 1 | 2,910 |
Region 131.1 | cyclic-lactone-autoinducer | 1 | 14,336 |
Region 153.1 | ranthipeptide | 513 | 18,540 |
Region 187.1 | RRE-containing | 1 | 9,309 |

No secondary metabolite regions were found in these records:
  NZ_LNAM01000001 (original name was: NZ_LNAM01000001.1)
  NZ_LNAM01000002 (original name was: NZ_LNAM01000002.1)
  NZ_LNAM01000003 (original name was: NZ_LNAM01000003.1)
  NZ_LNAM01000004 (original name was: NZ_LNAM01000004.1)
  NZ_LNAM01000005 (original name was: NZ_LNAM01000005.1)
  NZ_LNAM01000006 (original name was: NZ_LNAM01000006.1)
  NZ_LNAM01000007 (original name was: NZ_LNAM01000007.1)
  NZ_LNAM01000008 (original name was: NZ_LNAM01000008.1)
  NZ_LNAM01000009 (original name was: NZ_LNAM01000009.1)
  NZ_LNAM01000010 (original name was: NZ_LNAM01000010.1)
  NZ_LNAM01000011 (original name was: NZ_LNAM01000011.1)
  NZ_LNAM01000012 (original name was: NZ_LNAM01000012.1)
  NZ_LNAM01000013 (original name was: NZ_LNAM01000013.1)
  NZ_LNAM01000014 (original name was: NZ_LNAM01000014.1)
  NZ_LNAM01000015 (original name was: NZ_LNAM01000015.1)
  NZ_LNAM01000016 (original name was: NZ_LNAM01000016.1)
  NZ_LNAM01000017 (original name was: NZ_LNAM01000017.1)
  NZ_LNAM01000018 (original name was: NZ_LNAM01000018.1)
  NZ_LNAM01000019 (original name was: NZ_LNAM01000019.1)
  NZ_LNAM01000020 (original name was: NZ_LNAM01000020.1)
  NZ_LNAM01000021 (original name was: NZ_LNAM01000021.1)
  NZ_LNAM01000022 (original name was: NZ_LNAM01000022.1)
  NZ_LNAM01000023 (original name was: NZ_LNAM01000023.1)
  NZ_LNAM01000024 (original name was: NZ_LNAM01000024.1)
  NZ_LNAM01000025 (original name was: NZ_LNAM01000025.1)
  NZ_LNAM01000026 (original name was: NZ_LNAM01000026.1)
  NZ_LNAM01000027 (original name was: NZ_LNAM01000027.1)
  NZ_LNAM01000028 (original name was: NZ_LNAM01000028.1)
  NZ_LNAM01000029 (original name was: NZ_LNAM01000029.1)
  NZ_LNAM01000030 (original name was: NZ_LNAM01000030.1)
  NZ_LNAM01000031 (original name was: NZ_LNAM01000031.1)
  NZ_LNAM01000032 (original name was: NZ_LNAM01000032.1)
  NZ_LNAM01000033 (original name was: NZ_LNAM01000033.1)
  NZ_LNAM01000034 (original name was: NZ_LNAM01000034.1)
  NZ_LNAM01000035 (original name was: NZ_LNAM01000035.1)
  NZ_LNAM01000036 (original name was: NZ_LNAM01000036.1)
  NZ_LNAM01000037 (original name was: NZ_LNAM01000037.1)
  NZ_LNAM01000038 (original name was: NZ_LNAM01000038.1)
  NZ_LNAM01000039 (original name was: NZ_LNAM01000039.1)
  NZ_LNAM01000040 (original name was: NZ_LNAM01000040.1)
  NZ_LNAM01000041 (original name was: NZ_LNAM01000041.1)
  NZ_LNAM01000042 (original name was: NZ_LNAM01000042.1)
  NZ_LNAM01000043 (original name was: NZ_LNAM01000043.1)
  NZ_LNAM01000044 (original name was: NZ_LNAM01000044.1)
  NZ_LNAM01000045 (original name was: NZ_LNAM01000045.1)
  NZ_LNAM01000046 (original name was: NZ_LNAM01000046.1)
  NZ_LNAM01000047 (original name was: NZ_LNAM01000047.1)
  NZ_LNAM01000048 (original name was: NZ_LNAM01000048.1)
  NZ_LNAM01000050 (original name was: NZ_LNAM01000050.1)
  NZ_LNAM01000051 (original name was: NZ_LNAM01000051.1)
  NZ_LNAM01000052 (original name was: NZ_LNAM01000052.1)
  NZ_LNAM01000053 (original name was: NZ_LNAM01000053.1)
  NZ_LNAM01000054 (original name was: NZ_LNAM01000054.1)
  NZ_LNAM01000055 (original name was: NZ_LNAM01000055.1)
  NZ_LNAM01000056 (original name was: NZ_LNAM01000056.1)
  NZ_LNAM01000057 (original name was: NZ_LNAM01000057.1)
  NZ_LNAM01000058 (original name was: NZ_LNAM01000058.1)
  NZ_LNAM01000059 (original name was: NZ_LNAM01000059.1)
  NZ_LNAM01000060 (original name was: NZ_LNAM01000060.1)
  NZ_LNAM01000061 (original name was: NZ_LNAM01000061.1)
  NZ_LNAM01000062 (original name was: NZ_LNAM01000062.1)
  NZ_LNAM01000063 (original name was: NZ_LNAM01000063.1)
  NZ_LNAM01000064 (original name was: NZ_LNAM01000064.1)
  NZ_LNAM01000065 (original name was: NZ_LNAM01000065.1)
  NZ_LNAM01000066 (original name was: NZ_LNAM01000066.1)
  NZ_LNAM01000067 (original name was: NZ_LNAM01000067.1)
  NZ_LNAM01000068 (original name was: NZ_LNAM01000068.1)
  NZ_LNAM01000069 (original name was: NZ_LNAM01000069.1)
  NZ_LNAM01000070 (original name was: NZ_LNAM01000070.1)
  NZ_LNAM01000071 (original name was: NZ_LNAM01000071.1)
  NZ_LNAM01000072 (original name was: NZ_LNAM01000072.1)
  NZ_LNAM01000073 (original name was: NZ_LNAM01000073.1)
  NZ_LNAM01000074 (original name was: NZ_LNAM01000074.1)
  NZ_LNAM01000075 (original name was: NZ_LNAM01000075.1)
  NZ_LNAM01000076 (original name was: NZ_LNAM01000076.1)
  NZ_LNAM01000077 (original name was: NZ_LNAM01000077.1)
  NZ_LNAM01000078 (original name was: NZ_LNAM01000078.1)
  NZ_LNAM01000079 (original name was: NZ_LNAM01000079.1)
  NZ_LNAM01000080 (original name was: NZ_LNAM01000080.1)
  NZ_LNAM01000081 (original name was: NZ_LNAM01000081.1)
  NZ_LNAM01000082 (original name was: NZ_LNAM01000082.1)
  NZ_LNAM01000083 (original name was: NZ_LNAM01000083.1)
  NZ_LNAM01000084 (original name was: NZ_LNAM01000084.1)
  NZ_LNAM01000085 (original name was: NZ_LNAM01000085.1)
  NZ_LNAM01000086 (original name was: NZ_LNAM01000086.1)
  NZ_LNAM01000087 (original name was: NZ_LNAM01000087.1)
  NZ_LNAM01000088 (original name was: NZ_LNAM01000088.1)
  NZ_LNAM01000089 (original name was: NZ_LNAM01000089.1)
  NZ_LNAM01000090 (original name was: NZ_LNAM01000090.1)
  NZ_LNAM01000091 (original name was: NZ_LNAM01000091.1)
  NZ_LNAM01000092 (original name was: NZ_LNAM01000092.1)
  NZ_LNAM01000093 (original name was: NZ_LNAM01000093.1)
  NZ_LNAM01000094 (original name was: NZ_LNAM01000094.1)
  NZ_LNAM01000095 (original name was: NZ_LNAM01000095.1)
  NZ_LNAM01000096 (original name was: NZ_LNAM01000096.1)
  NZ_LNAM01000097 (original name was: NZ_LNAM01000097.1)
  NZ_LNAM01000098 (original name was: NZ_LNAM01000098.1)
  NZ_LNAM01000099 (original name was: NZ_LNAM01000099.1)
  NZ_LNAM01000100 (original name was: NZ_LNAM01000100.1)
  NZ_LNAM01000101 (original name was: NZ_LNAM01000101.1)
  NZ_LNAM01000102 (original name was: NZ_LNAM01000102.1)
  NZ_LNAM01000103 (original name was: NZ_LNAM01000103.1)
  NZ_LNAM01000104 (original name was: NZ_LNAM01000104.1)
  NZ_LNAM01000105 (original name was: NZ_LNAM01000105.1)
  NZ_LNAM01000106 (original name was: NZ_LNAM01000106.1)
  NZ_LNAM01000107 (original name was: NZ_LNAM01000107.1)
  NZ_LNAM01000112 (original name was: NZ_LNAM01000112.1)
  NZ_LNAM01000113 (original name was: NZ_LNAM01000113.1)
  NZ_LNAM01000124 (original name was: NZ_LNAM01000124.1)
  NZ_LNAM01000135 (original name was: NZ_LNAM01000135.1)
  NZ_LNAM01000146 (original name was: NZ_LNAM01000146.1)
  NZ_LNAM01000147 (original name was: NZ_LNAM01000147.1)
  NZ_LNAM01000148 (original name was: NZ_LNAM01000148.1)
  NZ_LNAM01000149 (original name was: NZ_LNAM01000149.1)
  NZ_LNAM01000150 (original name was: NZ_LNAM01000150.1)
  NZ_LNAM01000151 (original name was: NZ_LNAM01000151.1)
  NZ_LNAM01000152 (original name was: NZ_LNAM01000152.1)
  NZ_LNAM01000153 (original name was: NZ_LNAM01000153.1)
  NZ_LNAM01000154 (original name was: NZ_LNAM01000154.1)
  NZ_LNAM01000155 (original name was: NZ_LNAM01000155.1)
  NZ_LNAM01000156 (original name was: NZ_LNAM01000156.1)
  NZ_LNAM01000157 (original name was: NZ_LNAM01000157.1)
  NZ_LNAM01000158 (original name was: NZ_LNAM01000158.1)
  NZ_LNAM01000159 (original name was: NZ_LNAM01000159.1)
  NZ_LNAM01000160 (original name was: NZ_LNAM01000160.1)
  NZ_LNAM01000161 (original name was: NZ_LNAM01000161.1)
  NZ_LNAM01000162 (original name was: NZ_LNAM01000162.1)
  NZ_LNAM01000163 (original name was: NZ_LNAM01000163.1)
  NZ_LNAM01000164 (original name was: NZ_LNAM01000164.1)
  NZ_LNAM01000166 (original name was: NZ_LNAM01000166.1)
  NZ_LNAM01000167 (original name was: NZ_LNAM01000167.1)
  NZ_LNAM01000168 (original name was: NZ_LNAM01000168.1)
  NZ_LNAM01000169 (original name was: NZ_LNAM01000169.1)
  NZ_LNAM01000170 (original name was: NZ_LNAM01000170.1)
  NZ_LNAM01000171 (original name was: NZ_LNAM01000171.1)
  NZ_LNAM01000172 (original name was: NZ_LNAM01000172.1)
  NZ_LNAM01000173 (original name was: NZ_LNAM01000173.1)
  NZ_LNAM01000174 (original name was: NZ_LNAM01000174.1)
  NZ_LNAM01000175 (original name was: NZ_LNAM01000175.1)
  NZ_LNAM01000176 (original name was: NZ_LNAM01000176.1)
  NZ_LNAM01000177 (original name was: NZ_LNAM01000177.1)
  NZ_LNAM01000178 (original name was: NZ_LNAM01000178.1)
  NZ_LNAM01000179 (original name was: NZ_LNAM01000179.1)
  NZ_LNAM01000180 (original name was: NZ_LNAM01000180.1)
  NZ_LNAM01000181 (original name was: NZ_LNAM01000181.1)
  NZ_LNAM01000182 (original name was: NZ_LNAM01000182.1)
  NZ_LNAM01000183 (original name was: NZ_LNAM01000183.1)
  NZ_LNAM01000184 (original name was: NZ_LNAM01000184.1)
  NZ_LNAM01000185 (original name was: NZ_LNAM01000185.1)
  NZ_LNAM01000186 (original name was: NZ_LNAM01000186.1)
  NZ_LNAM01000188 (original name was: NZ_LNAM01000188.1)
  NZ_LNAM01000189 (original name was: NZ_LNAM01000189.1)
  NZ_LNAM01000190 (original name was: NZ_LNAM01000190.1)
  NZ_LNAM01000191 (original name was: NZ_LNAM01000191.1)
  NZ_LNAM01000192 (original name was: NZ_LNAM01000192.1)
  NZ_LNAM01000193 (original name was: NZ_LNAM01000193.1)
  NZ_LNAM01000194 (original name was: NZ_LNAM01000194.1)
  NZ_LNAM01000195 (original name was: NZ_LNAM01000195.1)
  NZ_LNAM01000196 (original name was: NZ_LNAM01000196.1)
  NZ_LNAM01000197 (original name was: NZ_LNAM01000197.1)
  NZ_LNAM01000198 (original name was: NZ_LNAM01000198.1)
  NZ_LNAM01000199 (original name was: NZ_LNAM01000199.1)
  NZ_LNAM01000200 (original name was: NZ_LNAM01000200.1)
  NZ_LNAM01000201 (original name was: NZ_LNAM01000201.1)
  NZ_LNAM01000202 (original name was: NZ_LNAM01000202.1)
  NZ_LNAM01000203 (original name was: NZ_LNAM01000203.1)
  NZ_LNAM01000204 (original name was: NZ_LNAM01000204.1)
  NZ_LNAM01000205 (original name was: NZ_LNAM01000205.1)
  NZ_LNAM01000206 (original name was: NZ_LNAM01000206.1)
  NZ_LNAM01000207 (original name was: NZ_LNAM01000207.1)
  NZ_LNAM01000208 (original name was: NZ_LNAM01000208.1)
  NZ_LNAM01000209 (original name was: NZ_LNAM01000209.1)
  NZ_LNAM01000210 (original name was: NZ_LNAM01000210.1)
  NZ_LNAM01000211 (original name was: NZ_LNAM01000211.1)
  NZ_LNAM01000212 (original name was: NZ_LNAM01000212.1)
  NZ_LNAM01000213 (original name was: NZ_LNAM01000213.1)
  NZ_LNAM01000214 (original name was: NZ_LNAM01000214.1)
  NZ_LNAM01000215 (original name was: NZ_LNAM01000215.1)
  NZ_LNAM01000216 (original name was: NZ_LNAM01000216.1)
  NZ_LNAM01000217 (original name was: NZ_LNAM01000217.1)
  NZ_LNAM01000218 (original name was: NZ_LNAM01000218.1)
  NZ_LNAM01000219 (original name was: NZ_LNAM01000219.1)
  NZ_LNAM01000220 (original name was: NZ_LNAM01000220.1)
  NZ_LNAM01000222 (original name was: NZ_LNAM01000222.1)
  NZ_LNAM01000223 (original name was: NZ_LNAM01000223.1)
  NZ_LNAM01000224 (original name was: NZ_LNAM01000224.1)
  NZ_LNAM01000225 (original name was: NZ_LNAM01000225.1)
  NZ_LNAM01000226 (original name was: NZ_LNAM01000226.1)
  NZ_LNAM01000227 (original name was: NZ_LNAM01000227.1)
  NZ_LNAM01000228 (original name was: NZ_LNAM01000228.1)
  NZ_LNAM01000229 (original name was: NZ_LNAM01000229.1)

Compact view
c00049_NZ_LNAM.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 2,910 nt. (total: 2,910 nt) Show pHMM detection rules used
Region on contig edge.
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

No matches found.

No matches found.

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
c00131_NZ_LNAM.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 14,336 nt. (total: 14,336 nt) Show pHMM detection rules used
Region on contig edge.
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

No matches found.

No matches found.

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00153_NZ_LNAM.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 513 - 18,540 nt. (total: 18,028 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000551.1 |  | 0.16 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000560.1 |  | 0.16 | RiPP | subtilomycin | Bacillus subtilis
BGC0000501.1 |  | 0.16 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000543.1 |  | 0.16 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000601.1 |  | 0.16 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0001391.1 |  | 0.16 | RiPP | thusin | Bacillus thuringiensis serovar rongseni
BGC0001407.1 |  | 0.16 | RiPP | bicereucin | Bacillus cereus SJ1
BGC0000517.1 |  | 0.16 | RiPP | haloduracin β, haloduracin α | Bacillus halodurans C-125
BGC0000519.1 |  | 0.16 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000571.1 |  | 0.16 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000551.1 |  | 0.47 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000560.1 |  | 0.47 | RiPP | subtilomycin | Bacillus subtilis
BGC0000501.1 |  | 0.47 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000543.1 |  | 0.47 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000601.1 |  | 0.46 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0001391.1 |  | 0.46 | RiPP | thusin | Bacillus thuringiensis serovar rongseni
BGC0001407.1 |  | 0.46 | RiPP | bicereucin | Bacillus cereus SJ1
BGC0000517.1 |  | 0.46 | RiPP | haloduracin β, haloduracin α | Bacillus halodurans C-125
BGC0000519.1 |  | 0.46 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000571.1 |  | 0.46 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
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c00187_NZ_LNAM.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 1 - 9,309 nt. (total: 9,309 nt) Show pHMM detection rules used
Region on contig edge.
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
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MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001210.1 |  | 0.18 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000521.1 |  | 0.17 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis
BGC0000561.1 |  | 0.17 | RiPP | thermophilin 1277 | Streptococcus thermophilus
BGC0000498.1 |  | 0.17 | RiPP | bovicin HJ50 | Streptococcus equinus
BGC0000626.1 |  | 0.17 | RiPP | thuricin | Bacillus thuringiensis
BGC0000539.1 |  | 0.17 | RiPP | nukacin ISK-1 | Staphylococcus warneri
BGC0000616.1 |  | 0.16 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001579.1 |  | 0.16 | RiPP | duramycin | Streptomyces cinnamoneus
BGC0000486.1 |  | 0.16 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000600.1 |  | 0.16 | RiPP | thurincin H | Bacillus thuringiensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001210.1 |  | 0.49 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000521.1 |  | 0.48 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis
BGC0000561.1 |  | 0.48 | RiPP | thermophilin 1277 | Streptococcus thermophilus
BGC0000498.1 |  | 0.48 | RiPP | bovicin HJ50 | Streptococcus equinus
BGC0000626.1 |  | 0.48 | RiPP | thuricin | Bacillus thuringiensis
BGC0000539.1 |  | 0.48 | RiPP | nukacin ISK-1 | Staphylococcus warneri
BGC0000616.1 |  | 0.47 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001579.1 |  | 0.47 | RiPP | duramycin | Streptomyces cinnamoneus
BGC0000486.1 |  | 0.46 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000600.1 |  | 0.46 | RiPP | thurincin H | Bacillus thuringiensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
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Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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