Select genomic region:
Overview
1.1
1.2
1.3
1.4
1.5
1.6
1.7

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP039887.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | arylpolyene | 656,999 | 694,898 | APE Vf | Other | 25%
Region 2 | terpene | 709,182 | 727,170 |
Region 3 | hserlactone | 1,046,860 | 1,067,609 |
Region 4 | arylpolyene | 1,164,320 | 1,203,427 |
Region 5 | terpene | 1,355,200 | 1,376,048 |
Region 6 | arylpolyene,resorcinol | 1,547,990 | 1,612,711 |
Region 7 | RiPP-like | 1,936,882 | 1,947,724 |

NZ_CP039887.1 - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 656,999 - 694,898 nt. (total: 37,900 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001808.1 |  | 0.21 | Other | toyocamycin | Streptomyces diastatochromogenes
BGC0000881.1 |  | 0.21 | Other | toyocamycin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000231.1 |  | 0.21 | Polyketide | griseusin | Streptomyces griseus
BGC0000234.1 |  | 0.20 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000261.1 |  | 0.19 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0000840.1 |  | 0.18 | Other | xanthomonadin I | Xanthomonas oryzae pv. oryzae
BGC0001302.1 |  | 0.18 | Other | lomofungin | Streptomyces lomondensis
BGC0000204.1 |  | 0.18 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000189.1 |  | 0.18 | Polyketide | 3-(2'-hydroxy-3'-oxo-4'-methylpentyl)-indole, 3-(2'-hydroxy-3'-oxo-4'-methylhexyl)-indole, 3-(2'-acetoxy-3'-oxo-4'-methylpentyl)-indole, 3-(2'-acetoxy-3'-oxo-4'-methylhexyl)-indole | Xenorhabdus bovienii SS-2004
BGC0001369.1 |  | 0.18 | Polyketide | metatricycloene | uncultured bacterium

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001808.1 |  | 0.54 | Other | toyocamycin | Streptomyces diastatochromogenes
BGC0000881.1 |  | 0.54 | Other | toyocamycin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000231.1 |  | 0.53 | Polyketide | griseusin | Streptomyces griseus
BGC0000234.1 |  | 0.53 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000261.1 |  | 0.52 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0000840.1 |  | 0.50 | Other | xanthomonadin I | Xanthomonas oryzae pv. oryzae
BGC0001302.1 |  | 0.50 | Other | lomofungin | Streptomyces lomondensis
BGC0000204.1 |  | 0.50 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000189.1 |  | 0.49 | Polyketide | 3-(2'-hydroxy-3'-oxo-4'-methylpentyl)-indole, 3-(2'-hydroxy-3'-oxo-4'-methylhexyl)-indole, 3-(2'-acetoxy-3'-oxo-4'-methylpentyl)-indole, 3-(2'-acetoxy-3'-oxo-4'-methylhexyl)-indole | Xenorhabdus bovienii SS-2004
BGC0001369.1 |  | 0.49 | Polyketide | metatricycloene | uncultured bacterium

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP039887.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 709,182 - 727,170 nt. (total: 17,989 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.31 | Terpene | carotenoid | Myxococcus xanthus
BGC0001456.1 |  | 0.22 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0001227.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000633.1 |  | 0.20 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000664.1 |  | 0.20 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000886.1 |  | 0.18 | Other | allylmalonyl-CoA | Streptomyces tsukubensis
BGC0000783.1 |  | 0.18 | Saccharide | O-antigen | Xanthomonas oryzae pv. oryzae
BGC0000649.1 |  | 0.18 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000774.1 |  | 0.17 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001238.1 |  | 0.17 | Other | biotin | Aspergillus nidulans

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.64 | Terpene | carotenoid | Myxococcus xanthus
BGC0001456.1 |  | 0.54 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0001227.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000633.1 |  | 0.53 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000664.1 |  | 0.52 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000886.1 |  | 0.50 | Other | allylmalonyl-CoA | Streptomyces tsukubensis
BGC0000783.1 |  | 0.50 | Saccharide | O-antigen | Xanthomonas oryzae pv. oryzae
BGC0000649.1 |  | 0.50 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000774.1 |  | 0.49 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001238.1 |  | 0.48 | Other | biotin | Aspergillus nidulans

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP039887.1 - Region 3 - hserlactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,046,860 - 1,067,609 nt. (total: 20,750 nt) Show pHMM detection rules used
hserlactone: Autoind_synth

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | hserlactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001682.1 |  | 0.33 | Other | N-acyl lysine/ornithine | Pseudomonas aeruginosa LESB58
BGC0000780.1 |  | 0.18 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000770.1 |  | 0.18 | Saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0000896.1 |  | 0.15 | Other | cycloserine | Streptomyces lavendulae subsp. lavendulae
BGC0001947.1 |  | 0.15 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000760.1 |  | 0.14 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001654.1 |  | 0.14 | Saccharide | lipooligosaccharide | Bacteroides thetaiotaomicron VPI-5482
BGC0000728.1 |  | 0.13 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae subsp. ozaenae
BGC0000729.1 |  | 0.13 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001682.1 |  | 0.66 | Other | N-acyl lysine/ornithine | Pseudomonas aeruginosa LESB58
BGC0000780.1 |  | 0.49 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000770.1 |  | 0.49 | Saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0000896.1 |  | 0.45 | Other | cycloserine | Streptomyces lavendulae subsp. lavendulae
BGC0001947.1 |  | 0.45 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000760.1 |  | 0.44 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001654.1 |  | 0.43 | Saccharide | lipooligosaccharide | Bacteroides thetaiotaomicron VPI-5482
BGC0000728.1 |  | 0.42 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae subsp. ozaenae
BGC0000729.1 |  | 0.42 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP039887.1 - Region 4 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,164,320 - 1,203,427 nt. (total: 39,108 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001077.1 |  | 0.23 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0001120.1 |  | 0.21 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000892.1 |  | 0.21 | Other | caryoynencin | Burkholderia gladioli BSR3
BGC0001595.1 |  | 0.19 | Alkaloid | fischerindole | Fischerella sp. SAG 46.79
BGC0000723.1 |  | 0.18 | Saccharide | β-D-galactosylvalidoxylamine-A | Streptomyces hygroscopicus subsp. limoneus
BGC0002008.1 |  | 0.18 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000709.1 |  | 0.17 | Saccharide | neomycin | Streptomyces fradiae ATCC 10745 = DSM 40063
BGC0001594.1 |  | 0.17 | Alkaloid | fischerindole L | Fischerella muscicola UTEX 1829
BGC0001366.1 |  | 0.16 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000843.1 |  | 0.16 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate | Streptomyces clavuligerus ATCC 27064

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001077.1 |  | 0.57 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0001120.1 |  | 0.53 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000892.1 |  | 0.53 | Other | caryoynencin | Burkholderia gladioli BSR3
BGC0001595.1 |  | 0.51 | Alkaloid | fischerindole | Fischerella sp. SAG 46.79
BGC0000723.1 |  | 0.50 | Saccharide | β-D-galactosylvalidoxylamine-A | Streptomyces hygroscopicus subsp. limoneus
BGC0002008.1 |  | 0.50 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000709.1 |  | 0.48 | Saccharide | neomycin | Streptomyces fradiae ATCC 10745 = DSM 40063
BGC0001594.1 |  | 0.48 | Alkaloid | fischerindole L | Fischerella muscicola UTEX 1829
BGC0001366.1 |  | 0.47 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000843.1 |  | 0.47 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate | Streptomyces clavuligerus ATCC 27064

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP039887.1 - Region 5 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,355,200 - 1,376,048 nt. (total: 20,849 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.33 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.29 | Terpene | carotenoid | Myxococcus xanthus
BGC0000634.1 |  | 0.21 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000630.1 |  | 0.21 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000643.1 |  | 0.20 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000640.1 |  | 0.19 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000656.1 |  | 0.19 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000646.1 |  | 0.18 | Terpene | β-carotein | uncultured bacterium
BGC0000664.1 |  | 0.17 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1 |  | 0.17 | Terpene | carotenoid | Streptomyces avermitilis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.66 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.62 | Terpene | carotenoid | Myxococcus xanthus
BGC0000634.1 |  | 0.53 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000630.1 |  | 0.53 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000643.1 |  | 0.53 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000640.1 |  | 0.51 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000656.1 |  | 0.50 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000646.1 |  | 0.50 | Terpene | β-carotein | uncultured bacterium
BGC0000664.1 |  | 0.48 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1 |  | 0.48 | Terpene | carotenoid | Streptomyces avermitilis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP039887.1 - Region 6 - arylpolyene,resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,547,990 - 1,612,711 nt. (total: 64,722 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0000779.1 |  |  | 0.32 | Saccharide | lipopolysaccharide | Aeromonas piscicola
BGC0000486.1 |  |  | 0.31 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000620.1 |  |  | 0.31 | RiPP | lacticin Q | Lactococcus lactis
BGC0001743.1 |  |  | 0.31 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000522.1 |  |  | 0.31 | RiPP | lacticin Z | Lactococcus lactis
BGC0001222.1 |  |  | 0.31 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  |  | 0.31 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000780.1 |  |  | 0.31 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0001514.1 |  |  | 0.29 | Other | aristeromycin | Streptomyces citricolor
BGC0000521.1 |  |  | 0.29 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000343.1 |  | 0.55 | NRP | enterobactin | Pseudomonas sp. J465
BGC0000751.1 |  | 0.51 | Saccharide | capsular polysaccharide | Actinobacillus pleuropneumoniae
BGC0001526.1 |  | 0.50 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000678.1 |  | 0.50 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000880.1 |  | 0.49 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0001927.1 |  | 0.49 | Other | A-94964 | Streptomyces sp.
BGC0000387.1 |  | 0.49 | NRP | mangotoxin | Pseudomonas syringae pv. syringae
BGC0000653.1 |  | 0.49 | Terpene | pentalenolactone | Streptomyces arenae
BGC0001995.1 |  | 0.49 | Terpene | heptelidic acid | Aspergillus oryzae RIB40
BGC0002000.1 |  | 0.49 | Polyketide | setomimycin | Streptomyces aurantiacus JA 4570

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
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No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
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NZ_CP039887.1 - Region 7 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 1,936,882 - 1,947,724 nt. (total: 10,843 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001650.1 |  | 0.04 | NRP | Le-pyrrolopyrazines | Lysobacter enzymogenes
BGC0001148.1 |  | 0.04 | NRP, RiPP | pheganomycin | Streptomyces cirratus
BGC0001804.1 |  | 0.03 | Polyketide | tiancimycin | Streptomyces sp. CB03234
BGC0001378.1 |  | 0.03 | Polyketide | tiancimycin | Streptomyces sp. CB03234
BGC0000236.1 |  | 0.03 | Polyketide | kinamycin | Streptomyces murayamaensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001650.1 |  | 0.20 | NRP | Le-pyrrolopyrazines | Lysobacter enzymogenes
BGC0001148.1 |  | 0.18 | NRP, RiPP | pheganomycin | Streptomyces cirratus
BGC0001804.1 |  | 0.17 | Polyketide | tiancimycin | Streptomyces sp. CB03234
BGC0001378.1 |  | 0.17 | Polyketide | tiancimycin | Streptomyces sp. CB03234
BGC0000236.1 |  | 0.15 | Polyketide | kinamycin | Streptomyces murayamaensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names