GCF_001561955.1_ASM156195v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP014223.1

Region	Type	From	To
Region 1	cyclic-lactone-autoinducer	1,227,325	1,246,340
Region 2	cyclic-lactone-autoinducer	2,096,146	2,116,712
Region 3	ranthipeptide	3,045,400	3,066,776

NZ_CP014223.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 1,227,325 - 1,246,340 nt. (total: 19,016 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.18	RiPP	circularin A	Clostridium beijerinckii
BGC0001120.1	0.17	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001579.1	0.16	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000496.1	0.16	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000548.1	0.15	RiPP	salivaricin A	Streptococcus salivarius
BGC0000916.1	0.14	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0001138.1	0.14	Other (Nucleoside)	a201a	Marinactinospora thermotolerans
BGC0001540.1	0.14	Other	CC-1065	Streptomyces zelensis
BGC0002009.1	0.14	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.49	RiPP	circularin A	Clostridium beijerinckii
BGC0001120.1	0.48	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001579.1	0.47	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000501.1	0.46	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000496.1	0.46	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000548.1	0.44	RiPP	salivaricin A	Streptococcus salivarius
BGC0000916.1	0.44	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0001138.1	0.43	Other (Nucleoside)	a201a	Marinactinospora thermotolerans
BGC0001540.1	0.43	Other	CC-1065	Streptomyces zelensis
BGC0002009.1	0.43	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP014223.1 - Region 2 - cyclic-lactone-autoinducer

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Location: 2,096,146 - 2,116,712 nt. (total: 20,567 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP014223.1 - Region 3 - ranthipeptide

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Location: 3,045,400 - 3,066,776 nt. (total: 21,377 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.23	RiPP	thurincin H	Bacillus thuringiensis
BGC0000938.1	0.17	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001787.1	0.16	RiPP	suicin 3908	Streptococcus suis
BGC0000527.1	0.16	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000516.1	0.16	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000626.1	0.16	RiPP	thuricin	Bacillus thuringiensis
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000523.1	0.16	RiPP	lactocin S	Lactobacillus sakei
BGC0000513.1	0.16	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.56	RiPP	thurincin H	Bacillus thuringiensis
BGC0000938.1	0.48	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000487.1	0.47	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001787.1	0.47	RiPP	suicin 3908	Streptococcus suis
BGC0000527.1	0.47	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000516.1	0.47	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000626.1	0.46	RiPP	thuricin	Bacillus thuringiensis
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000523.1	0.46	RiPP	lactocin S	Lactobacillus sakei
BGC0000513.1	0.46	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names