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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LR134384.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | arylpolyene | 1,265,652 | 1,315,102 | flexirubin | Other | 24%
Region 2 | RRE-containing | 1,708,358 | 1,728,624 |

NZ_LR134384.1 - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
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Location: 1,265,652 - 1,315,102 nt. (total: 49,451 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000886.1 |  | 0.22 | Other | allylmalonyl-CoA | Streptomyces tsukubensis
BGC0000261.1 |  | 0.22 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0000228.1 |  | 0.22 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0000194.1 |  | 0.21 | Polyketide | actinorhodin | Streptomyces coelicolor A3(2)
BGC0000248.1 |  | 0.21 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000219.1 |  | 0.21 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus
BGC0000272.1 |  | 0.20 | Polyketide | spore pigment | Streptomyces collinus
BGC0000839.1 |  | 0.20 | Other | flexirubin | Chitinophaga pinensis DSM 2588
BGC0001895.1 |  | 0.20 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0000237.1 |  | 0.20 | Polyketide | lactonamycin Z | Streptomyces sanglieri

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000886.1 |  | 0.55 | Other | allylmalonyl-CoA | Streptomyces tsukubensis
BGC0000261.1 |  | 0.55 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0000228.1 |  | 0.54 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0000194.1 |  | 0.54 | Polyketide | actinorhodin | Streptomyces coelicolor A3(2)
BGC0000248.1 |  | 0.54 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000219.1 |  | 0.53 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus
BGC0000272.1 |  | 0.53 | Polyketide | spore pigment | Streptomyces collinus
BGC0000839.1 |  | 0.52 | Other | flexirubin | Chitinophaga pinensis DSM 2588
BGC0001895.1 |  | 0.52 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0000237.1 |  | 0.52 | Polyketide | lactonamycin Z | Streptomyces sanglieri

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_LR134384.1 - Region 2 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,708,358 - 1,728,624 nt. (total: 20,267 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001947.1 |  | 0.13 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000788.1 |  | 0.13 | Saccharide | O-antigen | Salmonella enterica subsp. salamae serovar Greenside
BGC0000799.1 |  | 0.13 | Saccharide | colanic acid | Escherichia coli
BGC0000773.1 |  | 0.13 | Saccharide | lipopolysaccharide | Escherichia coli
BGC0001235.1 |  | 0.10 | NRP, Polyketide | antalid | Polyangium spumosum
BGC0000145.1 |  | 0.06 | Polyketide | salinosporamide A | Salinispora tropica
BGC0000469.1 |  | 0.06 | RiPP | bottromycin A2 | Streptomyces sp. BC16019
BGC0001041.1 |  | 0.05 | NRP, Polyketide | salinosporamide A | Salinispora tropica CNB-440
BGC0001379.1 |  | 0.05 | NRP | BD-12 | Streptomyces luteocolor
BGC0000953.1 |  | 0.04 | Saccharide | amicetin | Streptomyces vinaceusdrappus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001947.1 |  | 0.41 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000788.1 |  | 0.41 | Saccharide | O-antigen | Salmonella enterica subsp. salamae serovar Greenside
BGC0000799.1 |  | 0.41 | Saccharide | colanic acid | Escherichia coli
BGC0000773.1 |  | 0.41 | Saccharide | lipopolysaccharide | Escherichia coli
BGC0001235.1 |  | 0.36 | NRP, Polyketide | antalid | Polyangium spumosum
BGC0000145.1 |  | 0.25 | Polyketide | salinosporamide A | Salinispora tropica
BGC0000469.1 |  | 0.25 | RiPP | bottromycin A2 | Streptomyces sp. BC16019
BGC0001041.1 |  | 0.22 | NRP, Polyketide | salinosporamide A | Salinispora tropica CNB-440
BGC0001379.1 |  | 0.21 | NRP | BD-12 | Streptomyces luteocolor
BGC0000953.1 |  | 0.20 | Saccharide | amicetin | Streptomyces vinaceusdrappus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names