GCF_017433805.1_ASM1743380v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00003_NZ_JAFR.. (original name was: NZ_JAFRGN010000010.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS	1	29,256

c00004_NZ_JAFR.. (original name was: NZ_JAFRGN010000011.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	lassopeptide,RRE-containing	16,564	43,771

c00014_NZ_JAFR.. (original name was: NZ_JAFRGN010000020.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	ranthipeptide	12,174	33,915

c00020_NZ_JAFR.. (original name was: NZ_JAFRGN010000024.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	NRPS-like	1	10,079

c00057_NZ_JAFR.. (original name was: NZ_JAFRGN010000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 57.1	NRPS	240,118	266,202

Region	Type	From	To	Similarity
Region 3.1	NRPS	1	29,256
Region 4.1	lassopeptide,RRE-containing	16,564	43,771
Region 14.1	ranthipeptide	12,174	33,915
Region 20.1	NRPS-like	1	10,079
Region 57.1	NRPS	240,118	266,202

No secondary metabolite regions were found in these records:: c00001_NZ_JAFR.. (original name was: NZ_JAFRGN010000074.1); c00002_NZ_JAFR.. (original name was: NZ_JAFRGN010000009.1); c00005_NZ_JAFR.. (original name was: NZ_JAFRGN010000012.1); c00006_NZ_JAFR.. (original name was: NZ_JAFRGN010000013.1); c00007_NZ_JAFR.. (original name was: NZ_JAFRGN010000014.1); c00008_NZ_JAFR.. (original name was: NZ_JAFRGN010000001.1); c00009_NZ_JAFR.. (original name was: NZ_JAFRGN010000015.1); c00010_NZ_JAFR.. (original name was: NZ_JAFRGN010000016.1); c00011_NZ_JAFR.. (original name was: NZ_JAFRGN010000017.1); c00012_NZ_JAFR.. (original name was: NZ_JAFRGN010000018.1); c00013_NZ_JAFR.. (original name was: NZ_JAFRGN010000019.1); c00015_NZ_JAFR.. (original name was: NZ_JAFRGN010000002.1); c00016_NZ_JAFR.. (original name was: NZ_JAFRGN010000003.1); c00017_NZ_JAFR.. (original name was: NZ_JAFRGN010000021.1); c00018_NZ_JAFR.. (original name was: NZ_JAFRGN010000022.1); c00019_NZ_JAFR.. (original name was: NZ_JAFRGN010000023.1); c00021_NZ_JAFR.. (original name was: NZ_JAFRGN010000025.1); c00022_NZ_JAFR.. (original name was: NZ_JAFRGN010000026.1); c00023_NZ_JAFR.. (original name was: NZ_JAFRGN010000027.1); c00024_NZ_JAFR.. (original name was: NZ_JAFRGN010000028.1); c00025_NZ_JAFR.. (original name was: NZ_JAFRGN010000029.1); c00026_NZ_JAFR.. (original name was: NZ_JAFRGN010000030.1); c00027_NZ_JAFR.. (original name was: NZ_JAFRGN010000031.1); c00028_NZ_JAFR.. (original name was: NZ_JAFRGN010000032.1); c00029_NZ_JAFR.. (original name was: NZ_JAFRGN010000033.1); c00030_NZ_JAFR.. (original name was: NZ_JAFRGN010000034.1); c00031_NZ_JAFR.. (original name was: NZ_JAFRGN010000004.1); c00032_NZ_JAFR.. (original name was: NZ_JAFRGN010000035.1); c00033_NZ_JAFR.. (original name was: NZ_JAFRGN010000005.1); c00034_NZ_JAFR.. (original name was: NZ_JAFRGN010000036.1); c00035_NZ_JAFR.. (original name was: NZ_JAFRGN010000037.1); c00036_NZ_JAFR.. (original name was: NZ_JAFRGN010000038.1); c00037_NZ_JAFR.. (original name was: NZ_JAFRGN010000039.1); c00038_NZ_JAFR.. (original name was: NZ_JAFRGN010000040.1); c00039_NZ_JAFR.. (original name was: NZ_JAFRGN010000041.1); c00040_NZ_JAFR.. (original name was: NZ_JAFRGN010000042.1); c00041_NZ_JAFR.. (original name was: NZ_JAFRGN010000043.1); c00042_NZ_JAFR.. (original name was: NZ_JAFRGN010000044.1); c00043_NZ_JAFR.. (original name was: NZ_JAFRGN010000045.1); c00044_NZ_JAFR.. (original name was: NZ_JAFRGN010000046.1); c00045_NZ_JAFR.. (original name was: NZ_JAFRGN010000047.1); c00046_NZ_JAFR.. (original name was: NZ_JAFRGN010000048.1); c00047_NZ_JAFR.. (original name was: NZ_JAFRGN010000049.1); c00048_NZ_JAFR.. (original name was: NZ_JAFRGN010000050.1); c00049_NZ_JAFR.. (original name was: NZ_JAFRGN010000051.1); c00050_NZ_JAFR.. (original name was: NZ_JAFRGN010000052.1); c00051_NZ_JAFR.. (original name was: NZ_JAFRGN010000006.1); c00052_NZ_JAFR.. (original name was: NZ_JAFRGN010000053.1); c00053_NZ_JAFR.. (original name was: NZ_JAFRGN010000054.1); c00054_NZ_JAFR.. (original name was: NZ_JAFRGN010000055.1); c00055_NZ_JAFR.. (original name was: NZ_JAFRGN010000056.1); c00056_NZ_JAFR.. (original name was: NZ_JAFRGN010000057.1); c00058_NZ_JAFR.. (original name was: NZ_JAFRGN010000058.1); c00059_NZ_JAFR.. (original name was: NZ_JAFRGN010000059.1); c00060_NZ_JAFR.. (original name was: NZ_JAFRGN010000060.1); c00061_NZ_JAFR.. (original name was: NZ_JAFRGN010000061.1); c00062_NZ_JAFR.. (original name was: NZ_JAFRGN010000062.1); c00063_NZ_JAFR.. (original name was: NZ_JAFRGN010000063.1); c00064_NZ_JAFR.. (original name was: NZ_JAFRGN010000008.1); c00065_NZ_JAFR.. (original name was: NZ_JAFRGN010000064.1); c00066_NZ_JAFR.. (original name was: NZ_JAFRGN010000065.1); c00067_NZ_JAFR.. (original name was: NZ_JAFRGN010000066.1); c00068_NZ_JAFR.. (original name was: NZ_JAFRGN010000067.1); c00069_NZ_JAFR.. (original name was: NZ_JAFRGN010000068.1); c00070_NZ_JAFR.. (original name was: NZ_JAFRGN010000069.1); c00071_NZ_JAFR.. (original name was: NZ_JAFRGN010000070.1); c00072_NZ_JAFR.. (original name was: NZ_JAFRGN010000071.1); c00073_NZ_JAFR.. (original name was: NZ_JAFRGN010000072.1); c00074_NZ_JAFR.. (original name was: NZ_JAFRGN010000073.1)

Compact view

c00003_NZ_JAFR.. - Region 1 - NRPS

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Location: 1 - 29,256 nt. (total: 29,256 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000417.1	0.25	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000313.1	0.25	NRP	beauvericin	Beauveria bassiana
BGC0001185.1	0.23	NRP	bacillibactin	Bacillus velezensis FZB42
BGC0001833.1	0.22	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0000401.1	0.22	NRP	paenibactin	Paenibacillus elgii B69
BGC0001128.1	0.22	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.22	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.21	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000309.1	0.21	NRP	bacillibactin	Bacillus subtilis subsp. subtilis str. 168
BGC0001502.1	0.20	NRP	amonabactin P 750	Aeromonas hydrophila subsp. hydrophila ATCC 7966

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000417.1	0.59	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000313.1	0.58	NRP	beauvericin	Beauveria bassiana
BGC0001185.1	0.56	NRP	bacillibactin	Bacillus velezensis FZB42
BGC0001833.1	0.55	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0000401.1	0.55	NRP	paenibactin	Paenibacillus elgii B69
BGC0001128.1	0.55	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.54	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.54	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000309.1	0.53	NRP	bacillibactin	Bacillus subtilis subsp. subtilis str. 168
BGC0001502.1	0.53	NRP	amonabactin P 750	Aeromonas hydrophila subsp. hydrophila ATCC 7966

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 29256:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg3_1

Search NORINE for peptide: strict or relaxed

AMP-binding (453..822): X

NRPSPredictor2: tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAdTmgGVCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (1442..1812): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgiFmGImFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 60% (weak)

AMP-binding (2432..2802): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DSEgTikniK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 50% (weak)

ctg3_3

Search NORINE for peptide: strict or relaxed

AMP-binding (93..532): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gFnFiGggaK
Nearest Stachelhaus code:: pip
Stachelhaus code match:: 40% (weak)

ctg3_6

Search NORINE for peptide: strict or relaxed

AMP-binding (32..458): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gLTvIGgpiK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 50% (weak)

c00004_NZ_JAFR.. - Region 1 - RRE-containing,lassopeptide

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Location: 16,564 - 43,771 nt. (total: 27,208 nt) Show pHMM detection rules used

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lasso peptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000575.1	0.61	RiPP	lariatin	Rhodococcus jostii
BGC0001356.1	0.51	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000742.1	0.40	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000743.1	0.40	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000578.1	0.40	RiPP	SRO15-2005	Streptomyces filamentosus NRRL 15998
BGC0000763.1	0.36	Saccharide	stewartan	Pantoea stewartii subsp. stewartii DC283
BGC0001947.1	0.32	Saccharide	K53 capsular polysaccharide	Acinetobacter baumannii
BGC0000760.1	0.32	Saccharide	emulsan	Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001410.1	0.32	Saccharide	polysaccharide A	Bacteroides fragilis
BGC0000730.1	0.32	Saccharide	capsular polysaccharide	Klebsiella pneumoniae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000575.1	0.64	RiPP	lariatin	Rhodococcus jostii
BGC0001356.1	0.59	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000742.1	0.53	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000743.1	0.53	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000578.1	0.52	RiPP	SRO15-2005	Streptomyces filamentosus NRRL 15998
BGC0000763.1	0.50	Saccharide	stewartan	Pantoea stewartii subsp. stewartii DC283
BGC0001947.1	0.47	Saccharide	K53 capsular polysaccharide	Acinetobacter baumannii
BGC0000760.1	0.47	Saccharide	emulsan	Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001410.1	0.47	Saccharide	polysaccharide A	Bacteroides fragilis
BGC0000730.1	0.47	Saccharide	capsular polysaccharide	Klebsiella pneumoniae

Similar known gene clusters

No matches found.

Lasso peptide predictions

Lassopeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Lasso peptides

Core peptide predictions

No core peptides found.

c00014_NZ_JAFR.. - Region 1 - ranthipeptide

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Location: 12,174 - 33,915 nt. (total: 21,742 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000599.1	0.13	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000695.1	0.11	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0002034.1	0.08	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0000273.1	0.07	Polyketide, Saccharide	steffimycin D	Streptomyces steffisburgensis
BGC0002026.1	0.06	NRP	thaxteramide A1, thaxteramide A2, thaxteramide B1, thaxteramide B2	Jahnella sp. MSr9139
BGC0001555.1	0.06	RiPP	colicin V	Escherichia coli chi7122
BGC0001656.1	0.06	Polyketide	luminaolide	Planktothrix paucivesiculata PCC 9631
BGC0000423.1	0.06	NRP	scabichelin	Streptomyces scabiei 87.22
BGC0000344.1	0.05	NRP	entolysin	Pseudomonas entomophila L48
BGC0000203.1	0.05	Polyketide	BE-7585A	Amycolatopsis orientalis subsp. vinearia

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000599.1	0.42	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000695.1	0.38	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0002034.1	0.30	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0000273.1	0.27	Polyketide, Saccharide	steffimycin D	Streptomyces steffisburgensis
BGC0002026.1	0.26	NRP	thaxteramide A1, thaxteramide A2, thaxteramide B1, thaxteramide B2	Jahnella sp. MSr9139
BGC0001555.1	0.25	RiPP	colicin V	Escherichia coli chi7122
BGC0001656.1	0.25	Polyketide	luminaolide	Planktothrix paucivesiculata PCC 9631
BGC0000423.1	0.24	NRP	scabichelin	Streptomyces scabiei 87.22
BGC0000344.1	0.23	NRP	entolysin	Pseudomonas entomophila L48
BGC0000203.1	0.21	Polyketide	BE-7585A	Amycolatopsis orientalis subsp. vinearia

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00020_NZ_JAFR.. - Region 1 - NRPS-like

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Location: 1 - 10,079 nt. (total: 10,079 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001275.1	0.17	Polyketide	6-methylsalicyclic acid	Glarea lozoyensis
BGC0001314.1	0.16	Terpene	tirucalla	Arabidopsis thaliana
BGC0001586.1	0.15	Saccharide	EPS273	Pseudomonas stutzeri
BGC0001164.1	0.15	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0001160.1	0.15	Polyketide	1-nonadecene, (14Z)-1,14-nonadecadiene	Synechococcus sp. PCC 7002
BGC0001284.1	0.14	Terpene	alternariol	Parastagonospora nodorum SN15
BGC0001268.1	0.14	NRP, Polyketide	fusarin	Fusarium fujikuroi
BGC0000393.1	0.14	NRP, Polyketide	myxoprincomide-c506	Myxococcus xanthus DK 1622
BGC0000099.1	0.14	Polyketide	monascorubrin	Talaromyces marneffei
BGC0000892.1	0.13	Other	caryoynencin	Burkholderia gladioli BSR3

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001275.1	0.47	Polyketide	6-methylsalicyclic acid	Glarea lozoyensis
BGC0001314.1	0.47	Terpene	tirucalla	Arabidopsis thaliana
BGC0001586.1	0.45	Saccharide	EPS273	Pseudomonas stutzeri
BGC0001164.1	0.45	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0001160.1	0.45	Polyketide	1-nonadecene, (14Z)-1,14-nonadecadiene	Synechococcus sp. PCC 7002
BGC0001284.1	0.44	Terpene	alternariol	Parastagonospora nodorum SN15
BGC0001268.1	0.44	NRP, Polyketide	fusarin	Fusarium fujikuroi
BGC0000393.1	0.43	NRP, Polyketide	myxoprincomide-c506	Myxococcus xanthus DK 1622
BGC0000099.1	0.43	Polyketide	monascorubrin	Talaromyces marneffei
BGC0000892.1	0.42	Other	caryoynencin	Burkholderia gladioli BSR3

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00057_NZ_JAFR.. - Region 1 - NRPS

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Location: 240,118 - 266,202 nt. (total: 26,085 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001479.1	0.26	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000427.1	0.21	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001132.1	0.21	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000900.1	0.21	Other	ferrichrome	Aspergillus oryzae
BGC0001641.1	0.20	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001261.1	0.20	NRP	AM-toxin	Alternaria alternata
BGC0001615.1	0.20	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001128.1	0.20	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.20	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001833.1	0.20	NRP	icosalide A, icosalide B	Burkholderia gladioli

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001479.1	0.59	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000427.1	0.54	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001132.1	0.54	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000900.1	0.53	Other	ferrichrome	Aspergillus oryzae
BGC0001641.1	0.53	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001261.1	0.53	NRP	AM-toxin	Alternaria alternata
BGC0001615.1	0.53	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001128.1	0.53	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.53	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001833.1	0.53	NRP	icosalide A, icosalide B	Burkholderia gladioli

Similar known gene clusters

No matches found.

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 240117 - 266202:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg57_217

Search NORINE for peptide: strict or relaxed

AMP-binding (357..680): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gim-eSLAiK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 40% (weak)

ctg57_218

Search NORINE for peptide: strict or relaxed

AMP-binding (578..946): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgdTmgGVCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 60% (weak)