GCF_000238215.1_ASM23821v1_genomic - 6 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NC_016610.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	arylpolyene	1	32,018
Region 2	lanthipeptide-class-i	94,786	142,404
Region 3	arylpolyene	1,207,560	1,247,486
Region 4	RiPP-like	1,361,719	1,373,878
Region 5	arylpolyene	1,377,195	1,418,367	flexirubin	Other	16%
Region 6	resorcinol	3,213,014	3,254,144

NC_016610.1 - Region 1 - arylpolyene

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Location: 1 - 32,018 nt. (total: 32,018 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001407.1	0.16	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000489.1	0.16	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000840.1	0.15	Other	xanthomonadin I	Xanthomonas oryzae pv. oryzae
BGC0000582.1	0.15	RiPP	cypemycin	Streptomyces sp. OH-4156
BGC0000583.1	0.15	RiPP	grisemycin	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000255.1	0.15	Polyketide	pederin	Uncultured bacterium
BGC0001917.1	0.14	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0001897.1	0.14	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0000703.1	0.14	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001987.1	0.14	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001407.1	0.46	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000489.1	0.46	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000840.1	0.46	Other	xanthomonadin I	Xanthomonas oryzae pv. oryzae
BGC0000582.1	0.45	RiPP	cypemycin	Streptomyces sp. OH-4156
BGC0000583.1	0.45	RiPP	grisemycin	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000255.1	0.45	Polyketide	pederin	Uncultured bacterium
BGC0001917.1	0.44	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0001897.1	0.43	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0000703.1	0.43	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001987.1	0.43	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_016610.1 - Region 2 - lanthipeptide-class-i

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Location: 94,786 - 142,404 nt. (total: 47,619 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001289.1	0.27	RiPP	penisin	Paenibacillus ehimensis
BGC0001392.1	0.26	RiPP	pinensins	Chitinophaga pinensis DSM 2588
BGC0000554.1	0.25	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000542.1	0.24	RiPP	paenicidin B	Paenibacillus terrae
BGC0001391.1	0.23	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0001210.1	0.23	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000543.1	0.23	RiPP	pep5	Staphylococcus epidermidis
BGC0000516.1	0.23	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000552.1	0.23	RiPP	SmbA, SmbB	Streptococcus mutans
BGC0001311.1	0.23	RiPP	flavecins	Ruminococcus flavefaciens FD-1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001289.1	0.60	RiPP	penisin	Paenibacillus ehimensis
BGC0001392.1	0.60	RiPP	pinensins	Chitinophaga pinensis DSM 2588
BGC0000554.1	0.59	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000542.1	0.57	RiPP	paenicidin B	Paenibacillus terrae
BGC0001391.1	0.57	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0001210.1	0.57	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000543.1	0.57	RiPP	pep5	Staphylococcus epidermidis
BGC0000516.1	0.56	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000552.1	0.56	RiPP	SmbA, SmbB	Streptococcus mutans
BGC0001311.1	0.56	RiPP	flavecins	Ruminococcus flavefaciens FD-1

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lanthipeptides

Core peptide predictions

No core peptides found.

NC_016610.1 - Region 3 - arylpolyene

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Location: 1,207,560 - 1,247,486 nt. (total: 39,927 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000903.1	0.22	Other	fluorometabolite	Streptomyces cattleya
BGC0000851.1	0.19	Other	albonoursin	Streptomyces noursei ATCC 11455
BGC0000836.1	0.18	Other	APE Ec	Escherichia coli CFT073
BGC0001343.1	0.16	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000837.1	0.16	Other	APE Vf	Aliivibrio fischeri ES114
BGC0001987.1	0.15	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0001514.1	0.15	Other	aristeromycin	Streptomyces citricolor
BGC0001917.1	0.15	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0001895.1	0.15	Polyketide	huanglongmycin A, huanglongmycin B, huanglongmycin C	Streptomyces sp. CB09001
BGC0000255.1	0.15	Polyketide	pederin	Uncultured bacterium

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000903.1	0.55	Other	fluorometabolite	Streptomyces cattleya
BGC0000851.1	0.51	Other	albonoursin	Streptomyces noursei ATCC 11455
BGC0000836.1	0.50	Other	APE Ec	Escherichia coli CFT073
BGC0001343.1	0.47	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000837.1	0.46	Other	APE Vf	Aliivibrio fischeri ES114
BGC0001987.1	0.46	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0001514.1	0.45	Other	aristeromycin	Streptomyces citricolor
BGC0001917.1	0.45	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0001895.1	0.45	Polyketide	huanglongmycin A, huanglongmycin B, huanglongmycin C	Streptomyces sp. CB09001
BGC0000255.1	0.45	Polyketide	pederin	Uncultured bacterium

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_016610.1 - Region 4 - RiPP-like

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Location: 1,361,719 - 1,373,878 nt. (total: 12,160 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.20	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000617.1	0.19	RiPP	coagulin	Bacillus coagulans
BGC0000519.1	0.16	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000624.1	0.16	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000501.1	0.15	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000551.1	0.15	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0001861.1	0.15	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000484.1	0.15	RiPP	glycocin F	Lactobacillus plantarum
BGC0000584.1	0.15	RiPP	colicin V	Escherichia coli

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.53	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000617.1	0.51	RiPP	coagulin	Bacillus coagulans
BGC0000519.1	0.47	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000624.1	0.46	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000501.1	0.46	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000551.1	0.46	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0001861.1	0.46	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000484.1	0.45	RiPP	glycocin F	Lactobacillus plantarum
BGC0000584.1	0.45	RiPP	colicin V	Escherichia coli

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NC_016610.1 - Region 5 - arylpolyene

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Location: 1,377,195 - 1,418,367 nt. (total: 41,173 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001075.1	0.21	Terpene, Polyketide	aurachin RE	Rhodococcus erythropolis
BGC0001197.1	0.20	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000886.1	0.18	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000840.1	0.17	Other	xanthomonadin I	Xanthomonas oryzae pv. oryzae
BGC0001987.1	0.16	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0001917.1	0.16	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0001605.1	0.15	Terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0001138.1	0.15	Other (Nucleoside)	a201a	Marinactinospora thermotolerans
BGC0001928.1	0.15	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000010.1	0.15	Polyketide	aflatoxin	Aspergillus flavus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001075.1	0.54	Terpene, Polyketide	aurachin RE	Rhodococcus erythropolis
BGC0001197.1	0.52	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000886.1	0.50	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000840.1	0.49	Other	xanthomonadin I	Xanthomonas oryzae pv. oryzae
BGC0001987.1	0.47	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0001917.1	0.46	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0001605.1	0.45	Terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0001138.1	0.45	Other (Nucleoside)	a201a	Marinactinospora thermotolerans
BGC0001928.1	0.45	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000010.1	0.45	Polyketide	aflatoxin	Aspergillus flavus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_016610.1 - Region 6 - resorcinol

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Location: 3,213,014 - 3,254,144 nt. (total: 41,131 nt) Show pHMM detection rules used

resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000851.1	0.20	Other	albonoursin	Streptomyces noursei ATCC 11455
BGC0001411.1	0.19	Saccharide	polysaccharide B	Bacteroides fragilis
BGC0000887.1	0.17	Alkaloid	saxitoxin, gonyautoxin 2, gonyautoxin 3, toxin C2, toxin C3, gonyautoxin 5, decarbamoylsaxitoxin, decarbamoylgonyautoxin 2, decarbamoylgonyautoxin 3	Dolichospermum circinale AWQC131C
BGC0001526.1	0.16	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.16	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000838.1	0.16	Polyketide	flexirubin	Flavobacterium johnsoniae UW101
BGC0000196.1	0.15	Polyketide	AQ-256, AQ-270a, AQ-284a	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000243.1	0.15	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0002034.1	0.15	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0001983.1	0.15	Other	triacsins	Kitasatospora aureofaciens

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000851.1	0.53	Other	albonoursin	Streptomyces noursei ATCC 11455
BGC0001411.1	0.52	Saccharide	polysaccharide B	Bacteroides fragilis
BGC0000887.1	0.48	Alkaloid	saxitoxin, gonyautoxin 2, gonyautoxin 3, toxin C2, toxin C3, gonyautoxin 5, decarbamoylsaxitoxin, decarbamoylgonyautoxin 2, decarbamoylgonyautoxin 3	Dolichospermum circinale AWQC131C
BGC0001526.1	0.47	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.47	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000838.1	0.47	Polyketide	flexirubin	Flavobacterium johnsoniae UW101
BGC0000196.1	0.45	Polyketide	AQ-256, AQ-270a, AQ-284a	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000243.1	0.45	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0002034.1	0.44	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0001983.1	0.44	Other	triacsins	Kitasatospora aureofaciens

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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