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Overview
1.1
1.2
1.3

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP072549.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 1,074,440 | 1,102,823 | fengycin | NRP | 13%
Region 1.2 | arylpolyene | 1,522,137 | 1,563,366 | berninamycin A | RiPP | 26%
Region 1.3 | betalactone | 2,545,917 | 2,578,560 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 1,074,440 | 1,102,823 | fengycin | NRP | 13%
Region 1.2 | arylpolyene | 1,522,137 | 1,563,366 | berninamycin A | RiPP | 26%
Region 1.3 | betalactone | 2,545,917 | 2,578,560 |

No secondary metabolite regions were found in these records:
  NZ_CP072551.1
  NZ_CP072554.1
  NZ_CP072550.1
  NZ_CP072553.1
  NZ_CP072552.1

Compact view
NZ_CP072549.1 - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,074,440 - 1,102,823 nt. (total: 28,384 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000234.1 |  | 0.21 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000891.1 |  | 0.20 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000890.1 |  | 0.20 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000259.1 |  | 0.20 | Polyketide | prodigiosin | Serratia marcescens
BGC0001897.1 |  | 0.18 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000261.1 |  | 0.16 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0001343.1 |  | 0.16 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0001730.1 |  | 0.15 | Polyketide | paramagnetoquinone 1, paramagnetoquinone 2 | Actinoallomurus sp.
BGC0000774.1 |  | 0.15 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0000373.1 |  | 0.15 | NRP | holomycin | Streptomyces clavuligerus ATCC 27064

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000234.1 |  | 0.54 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000891.1 |  | 0.53 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000890.1 |  | 0.52 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000259.1 |  | 0.52 | Polyketide | prodigiosin | Serratia marcescens
BGC0001897.1 |  | 0.50 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000261.1 |  | 0.47 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0001343.1 |  | 0.47 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0001730.1 |  | 0.46 | Polyketide | paramagnetoquinone 1, paramagnetoquinone 2 | Actinoallomurus sp.
BGC0000774.1 |  | 0.45 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0000373.1 |  | 0.44 | NRP | holomycin | Streptomyces clavuligerus ATCC 27064

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072549.1 - Region 2 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,522,137 - 1,563,366 nt. (total: 41,230 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001104.1 |  | 0.23 | NRP, Polyketide | myxovirescin A1 | Myxococcus xanthus DK 1622
BGC0000219.1 |  | 0.22 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus
BGC0001264.1 |  | 0.21 | Polyketide | betaenone A, betaenone B, betaenone C | Phoma betae
BGC0001280.1 |  | 0.21 | Polyketide | betaenone C, betaenone A | Phoma betae
BGC0000231.1 |  | 0.21 | Polyketide | griseusin | Streptomyces griseus
BGC0001591.1 |  | 0.20 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.20 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001927.1 |  | 0.20 | Other | A-94964 | Streptomyces sp.
BGC0000221.1 |  | 0.20 | Polyketide | erdacin | uncultured soil bacterium V167
BGC0000254.1 |  | 0.20 | Polyketide | oxytetracycline | Streptomyces rimosus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001104.1 |  | 0.56 | NRP, Polyketide | myxovirescin A1 | Myxococcus xanthus DK 1622
BGC0000219.1 |  | 0.55 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus
BGC0001264.1 |  | 0.54 | Polyketide | betaenone A, betaenone B, betaenone C | Phoma betae
BGC0001280.1 |  | 0.54 | Polyketide | betaenone C, betaenone A | Phoma betae
BGC0000231.1 |  | 0.53 | Polyketide | griseusin | Streptomyces griseus
BGC0001591.1 |  | 0.53 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.53 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001927.1 |  | 0.53 | Other | A-94964 | Streptomyces sp.
BGC0000221.1 |  | 0.52 | Polyketide | erdacin | uncultured soil bacterium V167
BGC0000254.1 |  | 0.52 | Polyketide | oxytetracycline | Streptomyces rimosus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072549.1 - Region 3 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,545,917 - 2,578,560 nt. (total: 32,644 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000894.1 |  | 0.14 | Other | citrinin | Monascus aurantiacus
BGC0002000.1 |  | 0.14 | Polyketide | setomimycin | Streptomyces aurantiacus JA 4570
BGC0001156.1 |  | 0.14 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.14 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000938.1 |  | 0.14 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0001485.1 |  | 0.13 | Other | 3-demethylchuangxinmycin | Actinoplanes tsinanensis
BGC0001546.1 |  | 0.13 | Alkaloid | chuangxinmycin | Actinoplanes tsinanensis
BGC0000218.1 |  | 0.12 | Polyketide | doxorubicin | Streptomyces peucetius
BGC0000064.1 |  | 0.12 | Polyketide | fusarin | Fusarium verticillioides
BGC0001510.1 |  | 0.11 | Other | anisomycin | Streptomyces hygrospinosus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000894.1 |  | 0.44 | Other | citrinin | Monascus aurantiacus
BGC0002000.1 |  | 0.43 | Polyketide | setomimycin | Streptomyces aurantiacus JA 4570
BGC0001156.1 |  | 0.43 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.43 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000938.1 |  | 0.43 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0001485.1 |  | 0.42 | Other | 3-demethylchuangxinmycin | Actinoplanes tsinanensis
BGC0001546.1 |  | 0.42 | Alkaloid | chuangxinmycin | Actinoplanes tsinanensis
BGC0000218.1 |  | 0.40 | Polyketide | doxorubicin | Streptomyces peucetius
BGC0000064.1 |  | 0.40 | Polyketide | fusarin | Fusarium verticillioides
BGC0001510.1 |  | 0.39 | Other | anisomycin | Streptomyces hygrospinosus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names