GCF_000424105.1_ASM42410v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_AUJG01000005 (original name was: NZ_AUJG01000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	ranthipeptide	109,178	130,823

NZ_AUJG01000006 (original name was: NZ_AUJG01000006.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RiPP-like	16,077	28,374

NZ_AUJG01000009 (original name was: NZ_AUJG01000009.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	lassopeptide,RRE-containing	1	17,937

Region	Type	From	To	Similarity
Region 5.1	ranthipeptide	109,178	130,823
Region 6.1	RiPP-like	16,077	28,374
Region 9.1	lassopeptide,RRE-containing	1	17,937

No secondary metabolite regions were found in these records:: NZ_AUJG01000001 (original name was: NZ_AUJG01000001.1); NZ_AUJG01000002 (original name was: NZ_AUJG01000002.1); NZ_AUJG01000003 (original name was: NZ_AUJG01000003.1); NZ_AUJG01000004 (original name was: NZ_AUJG01000004.1); NZ_AUJG01000007 (original name was: NZ_AUJG01000007.1); NZ_AUJG01000008 (original name was: NZ_AUJG01000008.1); NZ_AUJG01000010 (original name was: NZ_AUJG01000010.1); NZ_AUJG01000011 (original name was: NZ_AUJG01000011.1); NZ_AUJG01000012 (original name was: NZ_AUJG01000012.1); NZ_AUJG01000013 (original name was: NZ_AUJG01000013.1); NZ_AUJG01000014 (original name was: NZ_AUJG01000014.1); NZ_AUJG01000015 (original name was: NZ_AUJG01000015.1); NZ_AUJG01000016 (original name was: NZ_AUJG01000016.1); NZ_AUJG01000017 (original name was: NZ_AUJG01000017.1); NZ_AUJG01000018 (original name was: NZ_AUJG01000018.1); NZ_AUJG01000019 (original name was: NZ_AUJG01000019.1); NZ_AUJG01000020 (original name was: NZ_AUJG01000020.1); NZ_KE384131.1; NZ_AUJG01000023 (original name was: NZ_AUJG01000023.1); NZ_AUJG01000024 (original name was: NZ_AUJG01000024.1); NZ_AUJG01000025 (original name was: NZ_AUJG01000025.1); NZ_AUJG01000026 (original name was: NZ_AUJG01000026.1); NZ_AUJG01000027 (original name was: NZ_AUJG01000027.1); NZ_AUJG01000028 (original name was: NZ_AUJG01000028.1); NZ_AUJG01000029 (original name was: NZ_AUJG01000029.1); NZ_AUJG01000030 (original name was: NZ_AUJG01000030.1); NZ_AUJG01000031 (original name was: NZ_AUJG01000031.1); NZ_AUJG01000032 (original name was: NZ_AUJG01000032.1)

Compact view

c00005_NZ_AUJG.. - Region 1 - ranthipeptide

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Location: 109,178 - 130,823 nt. (total: 21,646 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000601.1	0.17	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0000519.1	0.15	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000554.1	0.15	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000488.1	0.15	RiPP	circularin A	Clostridium beijerinckii
BGC0001494.1	0.15	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0001120.1	0.14	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000698.1	0.14	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii
BGC0000599.1	0.14	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000019.1	0.14	Polyketide	angolamycin	Streptomyces eurythermus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000601.1	0.48	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0000519.1	0.46	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000488.1	0.45	RiPP	circularin A	Clostridium beijerinckii
BGC0001494.1	0.45	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0001120.1	0.44	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000698.1	0.44	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0000294.1	0.43	NRP	acinetobactin	Acinetobacter baumannii
BGC0000599.1	0.43	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000019.1	0.43	Polyketide	angolamycin	Streptomyces eurythermus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00006_NZ_AUJG.. - Region 1 - RiPP-like

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Location: 16,077 - 28,374 nt. (total: 12,298 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000558.1	0.24	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001862.1	0.21	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.21	RiPP	pallidocin	Aeribacillus pallidus
BGC0001861.1	0.21	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000554.1	0.21	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001863.1	0.21	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000484.1	0.20	RiPP	glycocin F	Lactobacillus plantarum
BGC0000617.1	0.20	RiPP	coagulin	Bacillus coagulans
BGC0000500.1	0.20	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.1	0.19	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000558.1	0.57	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001862.1	0.54	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.54	RiPP	pallidocin	Aeribacillus pallidus
BGC0001861.1	0.54	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000554.1	0.53	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001863.1	0.53	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000484.1	0.52	RiPP	glycocin F	Lactobacillus plantarum
BGC0000617.1	0.52	RiPP	coagulin	Bacillus coagulans
BGC0000500.1	0.52	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.1	0.51	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00009_NZ_AUJG.. - Region 1 - RRE-containing,lassopeptide

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Location: 1 - 17,937 nt. (total: 17,937 nt) Show pHMM detection rules used

Region on contig edge.

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lasso peptides

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001634.1	0.62	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0000575.1	0.61	RiPP	lariatin	Rhodococcus jostii
BGC0001645.1	0.54	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0001356.1	0.45	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000578.1	0.41	RiPP	SRO15-2005	Streptomyces filamentosus NRRL 15998
BGC0001861.1	0.35	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000517.1	0.31	RiPP	haloduracin β, haloduracin α	Bacillus halodurans C-125
BGC0001388.1	0.31	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.31	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.31	RiPP	gassericin-T	Lactobacillus gasseri

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001634.1	0.64	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0000575.1	0.64	RiPP	lariatin	Rhodococcus jostii
BGC0001645.1	0.61	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0001356.1	0.56	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000578.1	0.53	RiPP	SRO15-2005	Streptomyces filamentosus NRRL 15998
BGC0001861.1	0.52	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000796.1	0.48	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000789.1	0.46	Saccharide	O-antigen	Escherichia coli
BGC0000517.1	0.46	RiPP	haloduracin β, haloduracin α	Bacillus halodurans C-125
BGC0001407.1	0.46	RiPP	bicereucin	Bacillus cereus SJ1

Similar known gene clusters

No matches found.

Lasso peptide predictions

Lassopeptide(s) for ctg9_7 - Putative Class II

ctg9_7 leader / core peptide / cleaved tail: MKTWITPRVEELEIVETAQ - GKSIKPSFDAFRIDENGNLWASFES

Legend:

Red: Putative macrolactam
Purple: Putative cleaved off residues

Detailed Pfam domain annotation

Selected features only

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Lasso peptides

Core peptide predictions

ctg9_7 - Class II: Cleavage pHMM score: -10.10; RODEO score: 17; Monoisotopic mass: 2796.3 Da; Molecular weight: 2798.0 Da; Number of bridges: 0