GCF_000960005.1_ASM96000v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_JYGP01000001 (original name was: NZ_JYGP01000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	32,746	44,899

NZ_JYGP01000002 (original name was: NZ_JYGP01000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	510,879	521,181	thermophilin 1277	RiPP:Lanthipeptide	10%
Region 2.2	T3PKS	1,093,956	1,135,128

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RiPP-like	32,746	44,899
Region 2.1	RiPP-like	510,879	521,181	thermophilin 1277	RiPP:Lanthipeptide	10%
Region 2.2	T3PKS	1,093,956	1,135,128

No secondary metabolite regions were found in these records:: NZ_JYGP01000003 (original name was: NZ_JYGP01000003.1)

Compact view

c00001_NZ_JYGP.. - Region 1 - RiPP-like

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Location: 32,746 - 44,899 nt. (total: 12,154 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.21	RiPP	coagulin	Bacillus coagulans
BGC0000619.1	0.16	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.16	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.16	RiPP	gassericin E	Lactobacillus gasseri
BGC0000558.1	0.15	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001928.1	0.15	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000624.1	0.15	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000703.1	0.14	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000584.1	0.14	RiPP	colicin V	Escherichia coli
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.54	RiPP	coagulin	Bacillus coagulans
BGC0000619.1	0.47	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.47	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.47	RiPP	gassericin E	Lactobacillus gasseri
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001928.1	0.45	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000624.1	0.45	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000703.1	0.43	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000584.1	0.43	RiPP	colicin V	Escherichia coli
BGC0000294.1	0.43	NRP	acinetobactin	Acinetobacter baumannii

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00002_NZ_JYGP.. - Region 1 - RiPP-like

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Location: 510,879 - 521,181 nt. (total: 10,303 nt) Show pHMM detection rules used

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001639.1	0.16	RiPP	klebsidin	Klebsiella pneumoniae
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001891.1	0.15	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001120.1	0.15	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000916.1	0.15	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0001887.1	0.14	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001607.1	0.14	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0000548.1	0.14	RiPP	salivaricin A	Streptococcus salivarius
BGC0000294.1	0.13	NRP	acinetobactin	Acinetobacter baumannii
BGC0000703.1	0.13	Saccharide	kanamycin	Streptomyces kanamyceticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001639.1	0.47	RiPP	klebsidin	Klebsiella pneumoniae
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001891.1	0.45	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001120.1	0.44	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000916.1	0.44	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0001887.1	0.44	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001607.1	0.44	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0000548.1	0.43	RiPP	salivaricin A	Streptococcus salivarius
BGC0000294.1	0.42	NRP	acinetobactin	Acinetobacter baumannii
BGC0000703.1	0.42	Saccharide	kanamycin	Streptomyces kanamyceticus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00002_NZ_JYGP.. - Region 2 - T3PKS

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Location: 1,093,956 - 1,135,128 nt. (total: 41,173 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.23	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001483.1	0.18	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0000244.1	0.17	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000843.1	0.17	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0000205.1	0.16	Polyketide	bryostatin	Candidatus Endobugula sertula
BGC0001521.1	0.15	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0001810.1	0.15	Polyketide	trehangelin	Polymorphospora rubra
BGC0000703.1	0.15	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000804.1	0.14	Saccharide	acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03	Streptomyces coelicoflavus ZG0656
BGC0000019.1	0.14	Polyketide	angolamycin	Streptomyces eurythermus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.56	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001483.1	0.50	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0000244.1	0.49	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000843.1	0.48	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0000205.1	0.46	Polyketide	bryostatin	Candidatus Endobugula sertula
BGC0001521.1	0.46	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0001810.1	0.45	Polyketide	trehangelin	Polymorphospora rubra
BGC0000703.1	0.45	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000804.1	0.44	Saccharide	acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03	Streptomyces coelicoflavus ZG0656
BGC0000019.1	0.43	Polyketide	angolamycin	Streptomyces eurythermus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names