GCF_001558775.1_ASM155877v1_genomic - 7 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP014022.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS	826,637	871,867	equibactin	NRP	28%
Region 2	LAP,NRPS	1,464,006	1,510,620	listeriolysin S	RiPP:LAP	50%
Region 3	terpene	1,601,479	1,622,342
Region 4	CDPS	1,662,366	1,683,070
Region 5	T3PKS	1,878,982	1,920,151
Region 6	NRPS,NRPS-like,siderophore	2,236,412	2,302,334	lugdunin	NRP	93%
Region 7	cyclic-lactone-autoinducer	2,430,936	2,451,648

NZ_CP014022.1 - Region 1 - NRPS

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Location: 826,637 - 871,867 nt. (total: 45,231 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000352.1	0.28	NRP	fimsbactin A	Acinetobacter sp. ADP1
BGC0001399.1	0.25	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001538.1	0.23	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0001128.1	0.21	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001615.1	0.21	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001758.1	0.21	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001479.1	0.21	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.21	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001833.1	0.21	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001135.1	0.21	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000352.1	0.62	NRP	fimsbactin A	Acinetobacter sp. ADP1
BGC0001399.1	0.59	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001538.1	0.56	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0001128.1	0.54	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001615.1	0.54	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001758.1	0.54	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001479.1	0.54	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.54	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001833.1	0.54	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001135.1	0.54	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 826636 - 871867:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_785

Search NORINE for peptide: strict or relaxed

AMP-binding (552..950): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYdlSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 80% (moderate)

ctg1_786

Search NORINE for peptide: strict or relaxed

AMP-binding (27..435): dhb

NRPSPredictor2: dhb

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGViCK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 90% (moderate)

ctg1_797

Search NORINE for peptide: strict or relaxed

AMP-binding (12..386): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLMVFCTVAK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

NZ_CP014022.1 - Region 2 - LAP,NRPS

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Location: 1,464,006 - 1,510,620 nt. (total: 46,615 nt) Show pHMM detection rules used

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001171.1	0.70	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0000308.1	0.64	NRP	aureusimine	Staphylococcus aureus subsp. aureus str. JKD6008
BGC0001173.1	0.54	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.54	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0000758.1	0.53	Saccharide	capsular polysaccharide	Staphylococcus aureus
BGC0000566.1	0.42	RiPP	streptolysin S	Streptococcus pyogenes M1 GAS
BGC0000829.1	0.34	Alkaloid	violacein	Chromobacterium violaceum
BGC0000521.1	0.33	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001210.1	0.33	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001364.1	0.33	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000308.1	0.79	NRP	aureusimine	Staphylococcus aureus subsp. aureus str. JKD6008
BGC0001171.1	0.69	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0001173.1	0.62	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.62	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001479.1	0.61	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001686.1	0.57	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567
BGC0001132.1	0.57	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001261.1	0.57	NRP	AM-toxin	Alternaria alternata
BGC0001128.1	0.56	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.56	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 1464005 - 1510620:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 1464439 - 1510620:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_1376

Search NORINE for peptide: strict or relaxed

AMP-binding (427..817): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (1452..1835): X

NRPSPredictor2: pro, pip

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmSIGaVvK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 70% (weak)

NZ_CP014022.1 - Region 3 - terpene

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Location: 1,601,479 - 1,622,342 nt. (total: 20,864 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.33	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000644.1	0.26	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000648.1	0.23	Terpene	carotenoid	Myxococcus xanthus
BGC0000637.1	0.23	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000888.1	0.22	Other	bacilysin	Bacillus sp. CS93
BGC0001184.1	0.22	Other	bacilysin	Bacillus velezensis FZB42
BGC0000645.1	0.21	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0001456.1	0.21	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000634.1	0.21	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0001227.1	0.20	Terpene	isorenieratene	Streptomyces collinus Tu 365

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.66	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000644.1	0.59	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000648.1	0.57	Terpene	carotenoid	Myxococcus xanthus
BGC0000637.1	0.56	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000888.1	0.55	Other	bacilysin	Bacillus sp. CS93
BGC0001184.1	0.54	Other	bacilysin	Bacillus velezensis FZB42
BGC0000645.1	0.54	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0001456.1	0.54	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000634.1	0.54	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0001227.1	0.53	Terpene	isorenieratene	Streptomyces collinus Tu 365

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP014022.1 - Region 4 - CDPS

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Location: 1,662,366 - 1,683,070 nt. (total: 20,705 nt) Show pHMM detection rules used

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002009.1	0.13	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0000892.1	0.13	Other	caryoynencin	Burkholderia gladioli BSR3
BGC0001335.1	0.10	Alkaloid	borregomycin A, borregomycin B, borregomycin C, borregomycin D	uncultured bacterium
BGC0001334.1	0.09	Alkaloid	caldoniamide A, cladoniamide B, cladoniamide C7, cladoniamide D, cladoniamide E, cladoniamide F, cladoniamide G	Streptomyces uncialis
BGC0000876.1	0.07	Other	neopolyoxin C	Streptomyces tendae
BGC0000346.1	0.06	NRP, Polyketide	epoxomicin	Goodfellowiella coeruleoviolacea
BGC0000333.1	0.05	NRP	cyclomarin D	Salinispora arenicola CNS-205
BGC0000915.1	0.05	Other (Aminocoumarin)	mitomycin	Streptomyces lavendulae
BGC0001952.1	0.05	NRP	minutissamide A, minutissamide C, minutissamide D	Anabaena minutissima UTEX B 1613
BGC0001199.1	0.05	Polyketide	akaeolide	Streptomyces sp. NBRC 109706

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002009.1	0.41	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0000892.1	0.41	Other	caryoynencin	Burkholderia gladioli BSR3
BGC0001335.1	0.35	Alkaloid	borregomycin A, borregomycin B, borregomycin C, borregomycin D	uncultured bacterium
BGC0001334.1	0.33	Alkaloid	caldoniamide A, cladoniamide B, cladoniamide C7, cladoniamide D, cladoniamide E, cladoniamide F, cladoniamide G	Streptomyces uncialis
BGC0000876.1	0.28	Other	neopolyoxin C	Streptomyces tendae
BGC0000346.1	0.25	NRP, Polyketide	epoxomicin	Goodfellowiella coeruleoviolacea
BGC0000333.1	0.23	NRP	cyclomarin D	Salinispora arenicola CNS-205
BGC0000915.1	0.22	Other (Aminocoumarin)	mitomycin	Streptomyces lavendulae
BGC0001952.1	0.22	NRP	minutissamide A, minutissamide C, minutissamide D	Anabaena minutissima UTEX B 1613
BGC0001199.1	0.22	Polyketide	akaeolide	Streptomyces sp. NBRC 109706

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP014022.1 - Region 5 - T3PKS

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Location: 1,878,982 - 1,920,151 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.23	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000702.1	0.19	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000827.1	0.18	Alkaloid	staurosporine	Salinispora arenicola CNS-205
BGC0000691.1	0.18	Saccharide	acarbose	Actinoplanes sp. SE50/110
BGC0000825.1	0.18	Alkaloid	staurosporine	Streptomyces sp. TP-A0274
BGC0000246.1	0.18	Polyketide	mithramycin	Streptomyces argillaceus
BGC0000796.1	0.18	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000867.1	0.17	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0000866.1	0.17	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0001660.1	0.17	RiPP	mathermycin	Marinactinospora thermotolerans

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.56	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000702.1	0.51	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000827.1	0.50	Alkaloid	staurosporine	Salinispora arenicola CNS-205
BGC0000691.1	0.50	Saccharide	acarbose	Actinoplanes sp. SE50/110
BGC0000825.1	0.50	Alkaloid	staurosporine	Streptomyces sp. TP-A0274
BGC0000246.1	0.49	Polyketide	mithramycin	Streptomyces argillaceus
BGC0000796.1	0.49	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000867.1	0.48	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0000866.1	0.48	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0001660.1	0.48	RiPP	mathermycin	Marinactinospora thermotolerans

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP014022.1 - Region 6 - NRPS,NRPS-like,siderophore

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Location: 2,236,412 - 2,302,334 nt. (total: 65,923 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001393.1	1.11	NRP	lugdunin	Staphylococcus lugdunensis N920143
BGC0002002.1	0.56	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000465.1	0.51	NRP	xenortide A, xenortide B, xenortide C, xenortide D	Xenorhabdus nematophila ATCC 19061
BGC0000396.1	0.51	NRP	nodularin	Nostoc sp. 73.1
BGC0001261.1	0.51	NRP	AM-toxin	Alternaria alternata
BGC0001873.1	0.51	NRP	pyrrolizixenamide A	Xenorhabdus szentirmaii DSM 16338
BGC0001250.1	0.50	NRP	epichloenin A	Epichloe festucae
BGC0001833.1	0.49	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001609.1	0.48	NRP	gliovirin	Trichoderma virens Gv29-8
BGC0001132.1	0.48	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001393.1	0.90	NRP	lugdunin	Staphylococcus lugdunensis N920143
BGC0002002.1	0.62	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000396.1	0.61	NRP	nodularin	Nostoc sp. 73.1
BGC0001261.1	0.61	NRP	AM-toxin	Alternaria alternata
BGC0000408.1	0.60	NRP	polymyxin	Paenibacillus polymyxa
BGC0000944.1	0.60	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000426.1	0.59	NRP	sevadicin	Paenibacillus larvae
BGC0000465.1	0.59	NRP	xenortide A, xenortide B, xenortide C, xenortide D	Xenorhabdus nematophila ATCC 19061
BGC0001833.1	0.59	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.59	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 8, location 2236411 - 2302334:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - X) + (val) + (val) + (cys)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 9, location 2236411 - 2296577:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - X) + (val) + (val) + (cys)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 10, location 2257297 - 2299037:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - X) + (val) + (val) + (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_2098

Search NORINE for peptide: strict or relaxed

AMP-binding (446..832): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFffGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 80% (moderate)

AMP-binding (1844..2200): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DpfSiGMIiK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 60% (weak)

ctg1_2099

Search NORINE for peptide: strict or relaxed

AMP-binding (447..819): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfLIGAVmK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 80% (moderate)

ctg1_2100

Search NORINE for peptide: strict or relaxed

AMP-binding (439..831): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWfGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

ctg1_2102

Search NORINE for peptide: strict or relaxed

AMP-binding (31..404): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

NZ_CP014022.1 - Region 7 - cyclic-lactone-autoinducer

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Location: 2,430,936 - 2,451,648 nt. (total: 20,713 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000207.1	0.14	Polyketide	chartreusin	Streptomyces chartreusis
BGC0001687.1	0.13	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSL12
BGC0000624.1	0.08	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001872.1	0.08	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0001053.1	0.08	NRP, Polyketide	tubulysin A	Archangium disciforme
BGC0001700.1	0.05	Polyketide	niphimycins C-E	Streptomyces sp. IMB7-145
BGC0000082.1	0.04	Polyketide	kijanimicin	Actinomadura kijaniata
BGC0000163.1	0.03	Polyketide	tetronasin	Streptomyces longisporoflavus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000207.1	0.43	Polyketide	chartreusin	Streptomyces chartreusis
BGC0001687.1	0.41	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSL12
BGC0000624.1	0.32	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001872.1	0.31	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0001053.1	0.30	NRP, Polyketide	tubulysin A	Archangium disciforme
BGC0001700.1	0.22	Polyketide	niphimycins C-E	Streptomyces sp. IMB7-145
BGC0000082.1	0.20	Polyketide	kijanimicin	Actinomadura kijaniata
BGC0000163.1	0.17	Polyketide	tetronasin	Streptomyces longisporoflavus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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