LOCUS       NC_010334.1             5401 bp    DNA     linear   UNK 01-JAN-1980
DEFINITION  NC_010334.1 Shewanella halifaxensis HAW-EB4, complete sequence.
ACCESSION   NC_010334
VERSION     NC_010334.1
KEYWORDS    .
SOURCE      
  ORGANISM  
            .
COMMENT     ##antiSMASH-Data-START##
            Version      :: 6.1.1
            Run date     :: 2024-03-14 15:49:56
            NOTE: This is a single cluster extracted from a larger record!
            Orig. start  :: 1900774
            Orig. end    :: 1906175
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     CDS             complement(1..357)
                     /locus_tag="ctg1_1620"
                     /transl_table=11
                     /translation="VSTNHIKQTLSEIESELRAKIGALPEMQAKLMEQHNYSLCELIQI
                     MTDVHLCEHPLFFKLMSLDATRCQLEIGLYGVCSDCEGQIEPQQLEKDPLEQRCIGCCG
                     EFSRQHRQELRLNH"
     protocluster    1..5401
                     /aStool="rule-based-clusters"
                     /category="RiPP"
                     /contig_edge="False"
                     /core_location="[1903118:1903961](+)"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      2345..3187
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
     cand_cluster    1..5401
                     /candidate_cluster_number="1"
                     /contig_edge="False"
                     /detection_rules="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /kind="single"
                     /product="RiPP-like"
                     /protoclusters="1"
                     /tool="antismash"
     region          1..5401
                     /candidate_cluster_numbers="1"
                     /contig_edge="False"
                     /product="RiPP-like"
                     /region_number="3"
                     /rules="(strepbact or Antimicrobial14 or Bacteriocin_IId or
                     BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or
                     Lactococcin or Antimicrobial17 or Lactococcin_972 or
                     Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or
                     TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or
                     TIGR03975 or DUF692 or TIGR01193)"
                     /tool="antismash"
     CDS             complement(476..1459)
                     /locus_tag="ctg1_1621"
                     /transl_table=11
                     /translation="MQRLKNTDILDSSVRIILAPMEGVVDDLMREILSAINPYDLMVTE
                     FVRVVDQLLPEKVFYRLCPELQTGGQTLSGTPVRVQLLGQNPDWMAENAARAIELGSKG
                     VDVNFGCPAKMVNRSNGGAVMLQYPEQLYNVVKAMRDAVPSDQPVTAKIRLGFNDKSLY
                     MENALAIYEAGASELAVHARSKVDGYKPPAYWEYITDINAKLPIPVIANGEIWNRDDAE
                     RCMSITGCDSVMVGRGAISLPNLAANIKGDTAYTWQQSLDLMLEYTNRELEGRKSTYYP
                     ARIKQWFGYLNRQYPEADTLFRELRVFKTADEIIGVLKRAQDNLAN"
     PFAM_domain     complement(596..1411)
                     /aSDomain="Dus"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF01207.19"
                     /description="Dihydrouridine synthase (Dus)"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1621_0061"
                     /evalue="6.90E-74"
                     /label="ctg1_1621"
                     /locus_tag="ctg1_1621"
                     /protein_end="288"
                     /protein_start="16"
                     /score="248.8"
                     /tool="antismash"
                     /translation="ILAPMEGVVDDLMREILSAINPYDLMVTEFVRVVDQLLPEKVFYR
                     LCPELQTGGQTLSGTPVRVQLLGQNPDWMAENAARAIELGSKGVDVNFGCPAKMVNRSN
                     GGAVMLQYPEQLYNVVKAMRDAVPSDQPVTAKIRLGFNDKSLYMENALAIYEAGASELA
                     VHARSKVDGYKPPAYWEYITDINAKLPIPVIANGEIWNRDDAERCMSITGCDSVMVGRG
                     AISLPNLAANIKGDTAYTWQQSLDLMLEYTNRELEGRKSTYYPARIKQWF"
     CDS             1797..2246
                     /locus_tag="ctg1_1622"
                     /transl_table=11
                     /translation="MKLVNKTAITVAVGAVVMGSALATSVQASPFGYSEMQAGYQIVEG
                     EGKCGEGKCGADKKKAKEGKCGEGKCGEDKMKAKEGKCGEGKCGADKMKAKEGKCGEGK
                     CGADKMKAKEGKCGEGKCGADKMKAKEGKCGADKKAKEGKCGGSK"
     CDS             2345..3187
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RiPP-like: DUF692"
                     /gene_kind="biosynthetic"
                     /locus_tag="ctg1_1623"
                     /sec_met_domain="DUF692 (E-value: 2.7e-104, bitscore:
                     346.2, seeds: 7, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MTSTNKGQVGLGLRREMLDEFCQGVPSEINFFEVAPENWMTLGGK
                     FGRQFRELTEKHEFYCHGLSLSIGSPAPLDIQFVKNVKDFLELHQMATYSEHLSYCSGA
                     GHMYDLMPIPFTEEAVKYVAKRVKQVEDIIERPLVLENVSFYAAPSAEMSEAEFVTAVM
                     QEADCKMLLDVNNIYVNSINHQYDAVEFLKAMPTDRIAYLHIAGHLKEAKDLIIDTHGA
                     DIVDPVWKLLDACHEFHGVFPTLLERDFNIPETSELLLEINQIHDYQNRYIASVKRSA"
     PFAM_domain     2369..3151
                     /aSDomain="DUF692"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF05114.15"
                     /description="Protein of unknown function (DUF692)"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1623_0062"
                     /evalue="9.10E-102"
                     /label="ctg1_1623"
                     /locus_tag="ctg1_1623"
                     /protein_end="269"
                     /protein_start="8"
                     /score="339.9"
                     /tool="antismash"
                     /translation="VGLGLRREMLDEFCQGVPSEINFFEVAPENWMTLGGKFGRQFREL
                     TEKHEFYCHGLSLSIGSPAPLDIQFVKNVKDFLELHQMATYSEHLSYCSGAGHMYDLMP
                     IPFTEEAVKYVAKRVKQVEDIIERPLVLENVSFYAAPSAEMSEAEFVTAVMQEADCKML
                     LDVNNIYVNSINHQYDAVEFLKAMPTDRIAYLHIAGHLKEAKDLIIDTHGADIVDPVWK
                     LLDACHEFHGVFPTLLERDFNIPETSELLLEINQIHDYQ"
     CDS             3187..3942
                     /locus_tag="ctg1_1624"
                     /transl_table=11
                     /translation="MSFVDVQQDFMDYIKDPSRPLPDGIEARRMKIYRELFFNNVDGFV
                     SNAFPVLKSLYKEEDWLEIVQSFFATHDCHTPIFVGISQEFLLFLQTEYQVTEIDPPFM
                     LELAHYEWLELVVAVAQDNASQRLITSEDTEIETIKLCVSATSKVAQYAYDVQHISPDY
                     RPEEPSELPQYFCIYRDLNEEVRFLLLNPLTAQMLAYLSQHESLGYTELLDWLVHTYTH
                     IQADALKAGCLQLLEDLGHKGIIKRFIGK"
     PFAM_domain     3202..3456
                     /aSDomain="DUF2063"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF09836.11"
                     /description="Putative DNA-binding domain"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1624_0063"
                     /evalue="7.80E-24"
                     /label="ctg1_1624"
                     /locus_tag="ctg1_1624"
                     /protein_end="90"
                     /protein_start="5"
                     /score="83.8"
                     /tool="antismash"
                     /translation="VQQDFMDYIKDPSRPLPDGIEARRMKIYRELFFNNVDGFVSNAFP
                     VLKSLYKEEDWLEIVQSFFATHDCHTPIFVGISQEFLLFL"
     CDS             4032..4151
                     /locus_tag="ctg1_1625"
                     /transl_table=11
                     /translation="MSQPFKDPFNIGYFIVFILLLLIPTLPATLSWLMVLGLL"
     CDS             4225..4593
                     /locus_tag="ctg1_1626"
                     /transl_table=11
                     /translation="MALKRSFFLIIGLCSLALGLLGILLPILPTVPFILLAAYCFARSS
                     ERMHQWLMTHPWFADALKNWQVQGAIRKSLKKKAYIVSSLSFLTSIVIVPLLWVKIMLA
                     CLGTGLIVYLRSIPEIEG"
     PFAM_domain     4237..4578
                     /aSDomain="DUF454"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF04304.15"
                     /description="Protein of unknown function (DUF454)"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1626_0064"
                     /evalue="6.30E-37"
                     /label="ctg1_1626"
                     /locus_tag="ctg1_1626"
                     /protein_end="118"
                     /protein_start="4"
                     /score="126.2"
                     /tool="antismash"
                     /translation="RSFFLIIGLCSLALGLLGILLPILPTVPFILLAAYCFARSSERMH
                     QWLMTHPWFADALKNWQVQGAIRKSLKKKAYIVSSLSFLTSIVIVPLLWVKIMLACLGT
                     GLIVYLRSIP"
     CDS             4850..5401
                     /locus_tag="ctg1_1627"
                     /transl_table=11
                     /translation="MVMNTDSLALIKNSIKTIPNYPKEGILFRDVTSLLEDPQAYKLTI
                     GLLVEHYKDQGFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEY
                     GHDVLEIHVDAINAEDKVLVIDDLLATGGTIEATVKLIRQLGGSVNDAAFVISLPDLGG
                     EQRLEKMDLKLVSLCEFEGE"
     aSDomain        4880..5386
                     /aSDomain="TIGR01090"
                     /aSTool="tigrfam"
                     /description="apt: adenine phosphoribosyltransferase"
                     /detection="hmmscan"
                     /domain_id="TIGRFam_ctg1_1627_0012"
                     /evalue="3.10E-72"
                     /identifier="TIGR01090"
                     /label="ctg1_1627"
                     /locus_tag="ctg1_1627"
                     /protein_end="179"
                     /protein_start="10"
                     /score="240.1"
                     /tool="antismash"
                     /translation="IKNSIKTIPNYPKEGILFRDVTSLLEDPQAYKLTIGLLVEHYKDQ
                     GFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVD
                     AINAEDKVLVIDDLLATGGTIEATVKLIRQLGGSVNDAAFVISLPDLGGEQRLEKMDLK
                     LVSLCE"
     PFAM_domain     4940..5296
                     /aSDomain="Pribosyltran"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF00156.29"
                     /description="Phosphoribosyl transferase domain"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1627_0065"
                     /evalue="1.10E-11"
                     /label="ctg1_1627"
                     /locus_tag="ctg1_1627"
                     /protein_end="149"
                     /protein_start="30"
                     /score="44.4"
                     /tool="antismash"
                     /translation="VTSLLEDPQAYKLTIGLLVEHYKDQGFTKVVGTEARGFLFGAPLA
                     LELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAINAEDKVLVIDDLLATGGT
                     IEATVKLIRQLGGSV"
ORIGIN
        1 ttagtggtta agtcttagct cttgcctatg ttgacgacta aactctccac aacaacctat
       61 acagcgctgc tctaatgggt ctttctctag ctgctgaggc tcaatttggc cctcacaatc
      121 gctacacaca ccgtacaaac ctatctcaag ctgacaacgc gttgcatcaa gactcatcaa
      181 tttgaagaat aatggatgct cgcataagtg aacgtcagtc atgatttgaa tgagttcaca
      241 aagagaataa ttatgctgct ccattagctt ggcttgcatt tcggggagtg caccaatctt
      301 cgctcttagt tccgactcga tctcggataa ggtttgtttg atatggtttg tactcactag
      361 gttgcctaca attattaact ctacggcttt ttagtctaaa catgcgggcg tgatgcgtta
      421 tgactaagat caattcagtg ctatattttg cggatttagc tcaattaaat actaattaat
      481 tcgccaaatt gtcctgtgcg cgttttaata caccaatgat ctcatctgct gttttaaata
      541 ccctaagctc tctaaagagg gtatcagcct ctggatattg ccgattcaga tagccaaacc
      601 attgcttaat tcgagcggga taataggtac tctttctacc ttctaactct ctattcgtgt
      661 actcaagcat gagatcaaga gattgctgcc aagtataagc agtatcgcct ttaatgttcg
      721 cagccaagtt cggtagcgat attgctccgc gtcccaccat cacactgtca cagccagtaa
      781 tactcataca gcgctcggca tcatcacggt tccagatctc gccgttagca ataactggga
      841 tcggtaactt agcattaatg tcggtgatat attcccagta ggcaggtggc ttatagccat
      901 caactttact gcgagcgtgt acagctaatt cactggcgcc agcctcataa atagcgagag
      961 cattttccat atagagtgac ttatcattaa agcctaagcg tattttggcg gtaacgggct
     1021 ggtcgctagg aactgcatca cgcatcgctt tcacaacatt gtagagttgc tccggatatt
     1081 gcaacatcac ggcgccacca ttgctgcgat tgaccatttt agcagggcag ccaaagttca
     1141 catcgacacc ttttgatccc agttcaatag cccttgctgc gttttctgcc atccaatcgg
     1201 gattttgtcc cagtagctgc actcgcacag gtgtaccgga tagtgtttga ccaccagttt
     1261 gcaactctgg gcaaagacga taaaagacct tttcaggtag cagttggtct acgacacgga
     1321 cgaactccgt aaccataaga tcataaggat tgattgcaga gaggatctct cgcattaaat
     1381 catctacaac gccttccatc ggcgccaaaa ttattcgcac agaactgtcc aaaatatcgg
     1441 tatttttaag gcgctgcatt ctacctcatc ctaaaccctc ggccaaatag acttgatact
     1501 tttatcgatt cgcctaggga atgctttctc aaaaggttaa tgctttgttt gtagaagata
     1561 gggattgtgt cgatctgttt ctaggtgaaa acagcaaaaa gttggcttta aatatataga
     1621 tatcactcca tggctgatat cacctttagt tgacctatca ggttttgcgc gtcataagcg
     1681 tgatgtatgt aaaattattg aaatttaatt cctgcttggc gggtctagta aagcaagccg
     1741 gcaaaatgcc ttgttggtaa ccgatagaat attgattaag taagagggaa gagattatga
     1801 aattagttaa taaaactgca atcactgtag ctgtaggtgc tgttgtaatg ggaagtgctt
     1861 tagcgaccag tgttcaagca agcccatttg gctatagtga aatgcaagcc ggttaccaga
     1921 tcgtagaagg tgaaggtaag tgcggtgagg gcaagtgtgg tgccgacaag aagaaagcca
     1981 aagaaggtaa gtgcggcgag ggtaaatgtg gcgaagacaa gatgaaagcc aaagaaggta
     2041 agtgcggtga gggtaaatgt ggcgccgaca agatgaaagc caaagaaggc aaatgcggtg
     2101 agggtaaatg tggcgccgac aagatgaaag ccaaagaagg caaatgcggc gagggtaaat
     2161 gtggcgccga taaaatgaaa gccaaagaag gcaagtgtgg cgcagataag aaagctaaag
     2221 aaggtaagtg cggtggttcg aagtaattaa ctgtcggctt aataccaatg ggtattaagt
     2281 agatctggac cagcaattgc tggtcctgtt tgttgattaa cctctaaatg aataggcgta
     2341 cagtatgacc agtactaata agggacaagt cggcttaggc cttaggcgag aaatgttaga
     2401 tgagttttgc caaggtgtac cgagtgaaat caattttttc gaagtcgccc cagaaaactg
     2461 gatgactcta ggaggcaagt ttggccgtca gtttagagag cttacggaaa agcatgagtt
     2521 ctactgtcat ggtttgtctt tatcaattgg tagccccgcg ccacttgata ttcagtttgt
     2581 taaaaacgtc aaagactttt tagagttgca tcagatggca acttattcag agcatttaag
     2641 ttattgttct ggggcagggc atatgtatga ccttatgccg atcccattta ccgaagaagc
     2701 ggtgaagtat gttgctaaac gagttaagca agttgaagac attattgagc gtcccttagt
     2761 gcttgagaat gtgtcatttt acgccgcacc tagcgctgaa atgtctgaag ctgaatttgt
     2821 tacagccgtc atgcaggaag ctgattgcaa gatgctgctc gacgttaaca atatctatgt
     2881 gaactcaatt aaccatcaat atgacgcagt tgaattttta aaggctatgc ccaccgatag
     2941 aattgcctac ttgcatatcg cggggcattt aaaggaagcc aaagatctta tcattgatac
     3001 tcatggtgcc gatattgtag accccgtatg gaagttgctc gatgcctgtc atgagtttca
     3061 tggtgttttt ccgacgctat tggaacgtga ttttaatatt cccgaaacca gtgaactact
     3121 gctagagatt aatcaaattc atgattatca aaatcggtat attgctagcg taaaaaggag
     3181 cgcttaatga gctttgtcga cgtacagcaa gactttatgg attacattaa agatccctca
     3241 cggccgcttc cagatggtat tgaagcgcgg cggatgaaaa tatatcgaga gctattcttt
     3301 aataatgtcg atggttttgt gtcaaatgcg tttcctgtgc taaaaagtct gtacaaagaa
     3361 gaggactggt tagaaatagt gcaaagcttc tttgccactc atgactgcca cacacctatt
     3421 tttgtcggga tctctcagga gtttctatta tttctccaaa ccgaatatca agtcaccgag
     3481 atagatccac cgtttatgtt ggagttggcc cattatgagt ggttagagct ggtggtggcc
     3541 gtcgcccaag ataatgcaag ccaacggctt ataacctctg aggatacaga aattgaaact
     3601 attaagttgt gcgtatcagc gacgtccaaa gtagcccagt atgcctatga tgttcagcac
     3661 attagtccgg actatcgtcc tgaagaaccg agtgaattac cgcagtattt ttgtatttat
     3721 cgcgacttaa atgaagaggt ccgattttta ctgttaaatc cattaaccgc acagatgctc
     3781 gcttatctgt cacagcatga gagccttggt tacacggagt tactagattg gttagtgcat
     3841 acttatacgc atatccaagc tgatgcttta aaggccggat gtttacagct actcgaggat
     3901 ttgggtcaca aaggtattat taaacgattt attggaaaat aaacgcactg ttagtgtgat
     3961 tgatatctat aattattgta aaagttgatc taaattgatg ttgtcagtcg caataataag
     4021 tagaggaagt tatgagtcag ccgtttaaag acccatttaa tattggttat tttattgttt
     4081 ttattctttt actgttgatc ccaacattac ctgcaactct gtcttggtta atggtcttgg
     4141 gtttacttta atctgtcttt aagccaaact cggttatact ggccactcaa tatagagtgg
     4201 cttttctgtt tctggattta atttatggcg ttaaaacgta gctttttcct gattattggt
     4261 ctttgcagct tagctttagg gctcttaggt attctgctgc cgatattacc taccgttccc
     4321 ttcatattgt tagcggcgta ttgctttgcc cgttcaagtg aacgcatgca tcaatggctg
     4381 atgactcacc cttggtttgc cgatgcactt aaaaattggc aggttcaggg agccattcgt
     4441 aaaagcctta agaagaaagc ctatattgtg agtagcttga gttttttaac cagtattgtg
     4501 atagtgcctc tgctctgggt taagattatg ttggcttgtc ttggaacggg tttaattgtt
     4561 tatcttagaa gtatcccaga aatcgagggc tgataactca ctgtgttgtt ccatcatgtt
     4621 gaaatttaag gtgtattttt acttttttat aacgacctcc ttctttcgga acaatcagaa
     4681 aataaaatac cctaggctaa gactacactt ctgctcttag taggttgcaa ctcgctataa
     4741 agcggcttaa gcttgatgcc gatttttaca cttcgatgac atctatactg gcataatcaa
     4801 atttttggct ggtgatgtca gcaaactaaa gtagattaag taaagaatta tggtaatgaa
     4861 tactgacagc ttggcactaa taaagaacag cattaaaacc atccctaact atcctaaaga
     4921 ggggatcttg tttagagatg tgactagctt attagaagat ccacaagcct ataaactcac
     4981 cattggcctt ttagtggagc actataaaga tcaaggcttt actaaagttg tcggtactga
     5041 agcgcgcggc tttttgtttg gtgcgccttt agctctagaa ttaggtattg gcttcgtgcc
     5101 agttcgtaag cctggtaagc taccaagaga aacgatttct gagagctatg agcttgaata
     5161 tggtcatgac gtgctagaga tccatgttga tgcgatcaac gccgaagata aggtattggt
     5221 tatcgatgac ttacttgcaa ctggcggcac tatcgaagcg acagttaaac ttattcgtca
     5281 gttaggcgga agtgtaaacg atgccgcttt cgttatctca ttgccagacc ttggtggtga
     5341 gcagcgtctt gagaagatgg atcttaagtt agtgagcctt tgcgaattcg aaggcgaata
     5401 a
//
