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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LT906463.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | arylpolyene | 372,902 | 415,746 | aryl polyenes | Other | 27%
Region 2 | arylpolyene,resorcinol | 561,278 | 639,115 |

NZ_LT906463.1 - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 372,902 - 415,746 nt. (total: 42,845 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.25 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000836.1 |  | 0.25 | Other | APE Ec | Escherichia coli CFT073
BGC0002008.1 |  | 0.24 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000231.1 |  | 0.24 | Polyketide | griseusin | Streptomyces griseus
BGC0000837.1 |  | 0.23 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0000234.1 |  | 0.23 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000778.1 |  | 0.23 | Saccharide | lipopolysaccharide | Aeromonas piscicola
BGC0001104.1 |  | 0.21 | NRP, Polyketide | myxovirescin A1 | Myxococcus xanthus DK 1622
BGC0000272.1 |  | 0.21 | Polyketide | spore pigment | Streptomyces collinus
BGC0000248.1 |  | 0.21 | Polyketide | naphtocyclinone | Streptomyces arenae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.59 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000836.1 |  | 0.58 | Other | APE Ec | Escherichia coli CFT073
BGC0002008.1 |  | 0.58 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000231.1 |  | 0.57 | Polyketide | griseusin | Streptomyces griseus
BGC0000837.1 |  | 0.56 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0000234.1 |  | 0.56 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000778.1 |  | 0.56 | Saccharide | lipopolysaccharide | Aeromonas piscicola
BGC0001104.1 |  | 0.54 | NRP, Polyketide | myxovirescin A1 | Myxococcus xanthus DK 1622
BGC0000272.1 |  | 0.54 | Polyketide | spore pigment | Streptomyces collinus
BGC0000248.1 |  | 0.54 | Polyketide | naphtocyclinone | Streptomyces arenae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_LT906463.1 - Region 2 - arylpolyene,resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 561,278 - 639,115 nt. (total: 77,838 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0000554.1 |  |  | 0.32 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000501.1 |  |  | 0.32 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0001222.1 |  |  | 0.31 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  |  | 0.31 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001210.1 |  |  | 0.31 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000500.1 |  |  | 0.31 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000487.1 |  |  | 0.31 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0000504.1 |  |  | 0.31 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000551.1 |  |  | 0.31 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000519.1 |  |  | 0.31 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.52 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0001591.1 |  | 0.51 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.51 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001903.1 |  | 0.48 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0000571.1 |  | 0.48 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0001400.1 |  | 0.48 | Polyketide | citreoviridin | Aspergillus terreus NIH2624
BGC0000517.1 |  | 0.48 | RiPP | haloduracin β, haloduracin α | Bacillus halodurans C-125
BGC0001618.1 |  | 0.48 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0001475.1 |  | 0.48 | Polyketide | aspterric acid | Aspergillus terreus NIH2624
BGC0001579.1 |  | 0.47 | RiPP | duramycin | Streptomyces cinnamoneus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names