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Overview
7.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_RJQC01000002 (original name was: NZ_RJQC01000002.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | betalactone | 191,384 | 221,663 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | betalactone | 191,384 | 221,663 |

No secondary metabolite regions were found in these records:
  NZ_RJQC01000001 (original name was: NZ_RJQC01000001.1)
  NZ_RJQC01000009 (original name was: NZ_RJQC01000009.1)
  NZ_RJQC01000010 (original name was: NZ_RJQC01000010.1)
  NZ_RJQC01000011 (original name was: NZ_RJQC01000011.1)
  NZ_RJQC01000012 (original name was: NZ_RJQC01000012.1)
  NZ_RJQC01000013 (original name was: NZ_RJQC01000013.1)
  NZ_RJQC01000003 (original name was: NZ_RJQC01000003.1)
  NZ_RJQC01000004 (original name was: NZ_RJQC01000004.1)
  NZ_RJQC01000005 (original name was: NZ_RJQC01000005.1)
  NZ_RJQC01000006 (original name was: NZ_RJQC01000006.1)
  NZ_RJQC01000007 (original name was: NZ_RJQC01000007.1)
  NZ_RJQC01000008 (original name was: NZ_RJQC01000008.1)

Compact view
c00007_NZ_RJQC.. - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
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Location: 191,384 - 221,663 nt. (total: 30,280 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001222.1 |  | 0.16 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000539.1 |  | 0.16 | RiPP | nukacin ISK-1 | Staphylococcus warneri
BGC0000427.1 |  | 0.16 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0000491.1 |  | 0.16 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000410.1 |  | 0.16 | NRP | pseudomonine | Pseudomonas fluorescens
BGC0000487.1 |  | 0.16 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0000375.1 |  | 0.16 | NRP | indigoidine | Streptomyces chromofuscus
BGC0000552.1 |  | 0.16 | RiPP | SmbA, SmbB | Streptococcus mutans
BGC0000501.1 |  | 0.15 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000554.1 |  | 0.15 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001222.1 |  | 0.46 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000539.1 |  | 0.46 | RiPP | nukacin ISK-1 | Staphylococcus warneri
BGC0000427.1 |  | 0.46 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0000491.1 |  | 0.46 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000410.1 |  | 0.46 | NRP | pseudomonine | Pseudomonas fluorescens
BGC0000487.1 |  | 0.46 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0000375.1 |  | 0.46 | NRP | indigoidine | Streptomyces chromofuscus
BGC0000552.1 |  | 0.46 | RiPP | SmbA, SmbB | Streptococcus mutans
BGC0000501.1 |  | 0.46 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000554.1 |  | 0.45 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names