GCF_018064205.1_ASM1806420v1_genomic - 2 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP072916.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	T1PKS	1,332,162	1,379,139	lipopolysaccharide	Saccharide:Lipopolysaccharide	8%
Region 2	terpene	2,097,336	2,120,976

NZ_CP072916.1 - Region 1 - T1PKS

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Location: 1,332,162 - 1,379,139 nt. (total: 46,978 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001124.1	0.28	Polyketide	pyranonigrin E	Aspergillus niger ATCC 1015
BGC0001067.1	0.28	Polyketide, Terpene	fumagillin, β-trans-bergamotene, fumagillol	Aspergillus fumigatus Af293
BGC0001340.1	0.28	Polyketide	byssochlamic acid	Byssochlamys fulva
BGC0000046.1	0.27	Polyketide	depudecin	Alternaria brassicicola
BGC0001913.1	0.27	Polyketide	phomoidride	fungal sp. ATCC 74256
BGC0001697.1	0.26	Polyketide	neurosporin A	Neurospora crassa OR74A
BGC0001504.1	0.25	Polyketide	amycomicin	Amycolatopsis sp. AA4
BGC0001205.1	0.24	Polyketide	communesin A, communesin B, communesin C, communesin D, communesin E, communesin G, communesin H	Penicillium expansum
BGC0001141.1	0.22	Polyketide	4-epi-15-epi-brefeldin A	Penicillium brefeldianum
BGC0001283.1	0.21	Polyketide	arsono-polyketide	Streptomyces lividans 1326

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001124.1	0.62	Polyketide	pyranonigrin E	Aspergillus niger ATCC 1015
BGC0001067.1	0.61	Polyketide, Terpene	fumagillin, β-trans-bergamotene, fumagillol	Aspergillus fumigatus Af293
BGC0001340.1	0.61	Polyketide	byssochlamic acid	Byssochlamys fulva
BGC0000046.1	0.60	Polyketide	depudecin	Alternaria brassicicola
BGC0001913.1	0.60	Polyketide	phomoidride	fungal sp. ATCC 74256
BGC0001697.1	0.59	Polyketide	neurosporin A	Neurospora crassa OR74A
BGC0001504.1	0.58	Polyketide	amycomicin	Amycolatopsis sp. AA4
BGC0001205.1	0.57	Polyketide	communesin A, communesin B, communesin C, communesin D, communesin E, communesin G, communesin H	Penicillium expansum
BGC0001141.1	0.55	Polyketide	4-epi-15-epi-brefeldin A	Penicillium brefeldianum
BGC0001283.1	0.54	Polyketide	arsono-polyketide	Streptomyces lividans 1326

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 1332161 - 1379139:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (redmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_1229

PKS_AT (343..641): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; Methylmalonyl-CoA: 70.8%; Propionyl-CoA: 66.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 98.6
Methylmalonyl-CoA: 98.0
Methoxymalonyl-CoA: 79.5
Isobutyryl-CoA: 60.9
Ethylmalonyl-CoA: 58.4
Propionyl-CoA: 50.8
2-Methylbutyryl-CoA: 35.9
inactive: 34.1
Benzoyl-CoA: 33.4
trans-1,2-CPDA: 30.8
Acetyl-CoA: 30.2
CHC-CoA: 25.8
fatty_acid: 15.2
3-Methylbutyryl-CoA: 1.3

NZ_CP072916.1 - Region 2 - terpene

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Location: 2,097,336 - 2,120,976 nt. (total: 23,641 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000646.1	0.25	Terpene	β-carotein	uncultured bacterium
BGC0000656.1	0.24	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0001227.1	0.24	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000634.1	0.24	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000664.1	0.24	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000640.1	0.24	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000633.1	0.24	Terpene	carotenoid	Streptomyces avermitilis
BGC0000643.1	0.24	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000630.1	0.23	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0001456.1	0.22	Terpene	isorenieratene	Streptomyces argillaceus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000646.1	0.58	Terpene	β-carotein	uncultured bacterium
BGC0000656.1	0.58	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0001227.1	0.57	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000634.1	0.57	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000664.1	0.57	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000640.1	0.57	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000633.1	0.57	Terpene	carotenoid	Streptomyces avermitilis
BGC0000643.1	0.57	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000630.1	0.57	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0001456.1	0.54	Terpene	isorenieratene	Streptomyces argillaceus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names