GCF_001038625.1_ASM103862v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP011803.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	cyclic-lactone-autoinducer	1	12,022
Region 1.2	cyclic-lactone-autoinducer	712,477	731,174
Region 1.3	cyclic-lactone-autoinducer	2,695,852	2,712,925
Region 1.4	ranthipeptide	3,828,338	3,850,060
Region 1.5	cyclic-lactone-autoinducer	4,366,842	4,387,638	locillomycin	NRP + Polyketide	14%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	cyclic-lactone-autoinducer	1	12,022
Region 1.2	cyclic-lactone-autoinducer	712,477	731,174
Region 1.3	cyclic-lactone-autoinducer	2,695,852	2,712,925
Region 1.4	ranthipeptide	3,828,338	3,850,060
Region 1.5	cyclic-lactone-autoinducer	4,366,842	4,387,638	locillomycin	NRP + Polyketide	14%

No secondary metabolite regions were found in these records:: NZ_CP011804.1

Compact view

NZ_CP011803.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 12,022 nt. (total: 12,022 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000783.1	0.18	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0000488.1	0.18	RiPP	circularin A	Clostridium beijerinckii
BGC0001588.1	0.16	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000643.1	0.16	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000528.1	0.16	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001862.1	0.16	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.16	RiPP	pallidocin	Aeribacillus pallidus
BGC0000886.1	0.16	Other	allylmalonyl-CoA	Streptomyces tsukubensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000783.1	0.50	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0000488.1	0.50	RiPP	circularin A	Clostridium beijerinckii
BGC0001588.1	0.47	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0000486.1	0.47	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000643.1	0.47	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000528.1	0.47	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001862.1	0.46	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.46	RiPP	pallidocin	Aeribacillus pallidus
BGC0000886.1	0.46	Other	allylmalonyl-CoA	Streptomyces tsukubensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP011803.1 - Region 2 - cyclic-lactone-autoinducer

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Location: 712,477 - 731,174 nt. (total: 18,698 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.24	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0000631.1	0.16	Terpene	botrydial	Botrytis cinerea B05.10
BGC0000663.1	0.16	Terpene	hopene	Streptomyces coelicolor A3(2)
BGC0000488.1	0.16	RiPP	circularin A	Clostridium beijerinckii
BGC0001940.1	0.15	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0000766.1	0.15	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000928.1	0.15	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.15	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0001535.1	0.13	Other	branched-chain fatty acids	Streptomyces filamentosus
BGC0000252.1	0.13	Polyketide	nonactin	Streptomyces griseus subsp. griseus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.57	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0000631.1	0.47	Terpene	botrydial	Botrytis cinerea B05.10
BGC0000663.1	0.47	Terpene	hopene	Streptomyces coelicolor A3(2)
BGC0000488.1	0.46	RiPP	circularin A	Clostridium beijerinckii
BGC0001940.1	0.45	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0000766.1	0.45	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000928.1	0.45	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.45	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0001535.1	0.42	Other	branched-chain fatty acids	Streptomyces filamentosus
BGC0000252.1	0.42	Polyketide	nonactin	Streptomyces griseus subsp. griseus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP011803.1 - Region 3 - cyclic-lactone-autoinducer

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Location: 2,695,852 - 2,712,925 nt. (total: 17,074 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000523.1	0.20	RiPP	lactocin S	Lactobacillus sakei
BGC0000488.1	0.17	RiPP	circularin A	Clostridium beijerinckii
BGC0000539.1	0.16	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001779.1	0.16	RiPP	siamycin	Streptomyces nodosus
BGC0000626.1	0.16	RiPP	thuricin	Bacillus thuringiensis
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000521.1	0.16	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001407.1	0.16	RiPP	bicereucin	Bacillus cereus SJ1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000523.1	0.52	RiPP	lactocin S	Lactobacillus sakei
BGC0000488.1	0.49	RiPP	circularin A	Clostridium beijerinckii
BGC0000539.1	0.47	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001779.1	0.47	RiPP	siamycin	Streptomyces nodosus
BGC0000626.1	0.46	RiPP	thuricin	Bacillus thuringiensis
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000521.1	0.46	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001407.1	0.46	RiPP	bicereucin	Bacillus cereus SJ1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP011803.1 - Region 4 - ranthipeptide

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Location: 3,828,338 - 3,850,060 nt. (total: 21,723 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.18	Other	nucleocidin	Streptomyces calvus
BGC0001120.1	0.13	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001860.1	0.08	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.08	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0001298.1	0.08	Polyketide	4-Z-annimycin	Streptomyces calvus
BGC0000604.1	0.08	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001155.1	0.07	RiPP	GE2270	Planobispora rosea
BGC0001591.1	0.07	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.07	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001579.1	0.07	RiPP	duramycin	Streptomyces cinnamoneus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.49	Other	nucleocidin	Streptomyces calvus
BGC0001120.1	0.41	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001860.1	0.32	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.32	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0001298.1	0.31	Polyketide	4-Z-annimycin	Streptomyces calvus
BGC0000604.1	0.31	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001155.1	0.29	RiPP	GE2270	Planobispora rosea
BGC0001591.1	0.28	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.28	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001579.1	0.27	RiPP	duramycin	Streptomyces cinnamoneus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP011803.1 - Region 5 - cyclic-lactone-autoinducer

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Location: 4,366,842 - 4,387,638 nt. (total: 20,797 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.17	RiPP	circularin A	Clostridium beijerinckii
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans
BGC0000517.1	0.16	RiPP	haloduracin β, haloduracin α	Bacillus halodurans C-125
BGC0000560.1	0.16	RiPP	subtilomycin	Bacillus subtilis
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000543.1	0.16	RiPP	pep5	Staphylococcus epidermidis
BGC0000294.1	0.15	NRP	acinetobactin	Acinetobacter baumannii
BGC0000522.1	0.15	RiPP	lacticin Z	Lactococcus lactis
BGC0000620.1	0.15	RiPP	lacticin Q	Lactococcus lactis
BGC0001229.1	0.15	RiPP	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.49	RiPP	circularin A	Clostridium beijerinckii
BGC0000617.1	0.47	RiPP	coagulin	Bacillus coagulans
BGC0000517.1	0.46	RiPP	haloduracin β, haloduracin α	Bacillus halodurans C-125
BGC0000560.1	0.46	RiPP	subtilomycin	Bacillus subtilis
BGC0000500.1	0.46	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000543.1	0.46	RiPP	pep5	Staphylococcus epidermidis
BGC0000294.1	0.46	NRP	acinetobactin	Acinetobacter baumannii
BGC0000522.1	0.46	RiPP	lacticin Z	Lactococcus lactis
BGC0000620.1	0.46	RiPP	lacticin Q	Lactococcus lactis
BGC0001229.1	0.45	RiPP	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names