GCF_000146895.1_ASM14689v1_genomic - 1 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_GL405260.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	lanthipeptide-class-ii	2,486,257	2,502,416

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	lanthipeptide-class-ii	2,486,257	2,502,416

No secondary metabolite regions were found in these records:: NZ_GL405261.1; NZ_GL405262.1; NZ_GL405263.1; NZ_GL405264.1; NZ_GL405265.1; NZ_GL405266.1; NZ_GL405267.1; NZ_GL405268.1; NZ_GL405269.1; NZ_GL405270.1; NZ_GL405271.1; NZ_GL405272.1; NZ_GL405273.1; NZ_GL405274.1; NZ_GL405275.1

Compact view

NZ_GL405260.1 - Region 1 - lanthipeptide-class-ii

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Location: 2,486,257 - 2,502,416 nt. (total: 16,160 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.38	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001579.1	0.32	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000539.1	0.27	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000500.1	0.26	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000521.1	0.25	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000516.1	0.25	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000503.1	0.23	RiPP	cinnamycin	Streptomyces cinnamoneus
BGC0000563.1	0.23	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001787.1	0.22	RiPP	suicin 3908	Streptococcus suis
BGC0001364.1	0.21	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.70	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001579.1	0.66	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000539.1	0.61	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000500.1	0.60	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000521.1	0.59	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000516.1	0.58	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000503.1	0.57	RiPP	cinnamycin	Streptomyces cinnamoneus
BGC0000563.1	0.56	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001787.1	0.56	RiPP	suicin 3908	Streptococcus suis
BGC0001364.1	0.53	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg1_2178 - Putative Class II

ctg1_2179 leader / core peptide: MFEFEEVDLAEVPEELLENEAGA - GDhaAAFKDhbLGCCWCLPWYDhaDhaWDhbKCGVVCDhaEQYC
ctg1_2180 leader / core peptide: MVKEPELDFVVELGDEDLDVSGG - DhbDhaIPCGDhbLIIADhbLDhbQCFNDDhbLVWGDhaCRLGDhbRACC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lanthipeptides

Core peptide predictions

ctg1_2179 - Class II

Cleavage pHMM score: -1.40

RODEO score: 0

Monoisotopic mass: 3457.5 Da

Molecular weight: 3460.0 Da

Number of bridges: 6

ctg1_2180 - Class II

Cleavage pHMM score: -0.50

RODEO score: 0

Monoisotopic mass: 3472.7 Da

Molecular weight: 3475.1 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3493.1 Da N = 1; 3511.1 Da N = 2; 3529.1 Da N = 3