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Overview
1.1

### Identified secondary metabolite regions using strictness 'relaxed'

c00001_NZ_CAKM.. (original name was: NZ_CAKMXA010000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ranthipeptide | 1,792,694 | 1,814,300 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ranthipeptide | 1,792,694 | 1,814,300 |

No secondary metabolite regions were found in these records:
  c00002_NZ_CAKM.. (original name was: NZ_CAKMXA010000002.1)

Compact view
c00001_NZ_CAKM.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 1,792,694 - 1,814,300 nt. (total: 21,607 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
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Gene details
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
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Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.17 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000599.1 |  | 0.15 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0001400.1 |  | 0.14 | Polyketide | citreoviridin | Aspergillus terreus NIH2624
BGC0000807.1 |  | 0.09 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0000094.1 |  | 0.07 | Polyketide, Saccharide | methymycin | Streptomyces venezuelae
BGC0000678.1 |  | 0.06 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001995.1 |  | 0.06 | Terpene | heptelidic acid | Aspergillus oryzae RIB40
BGC0000907.1 |  | 0.06 | Other | lincomycin | Streptomyces lincolnensis
BGC0000225.1 |  | 0.04 | Polyketide | frenolicin B | Streptomyces roseofulvus
BGC0000653.1 |  | 0.04 | Terpene | pentalenolactone | Streptomyces arenae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.48 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000599.1 |  | 0.45 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0001400.1 |  | 0.43 | Polyketide | citreoviridin | Aspergillus terreus NIH2624
BGC0000807.1 |  | 0.32 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0000094.1 |  | 0.30 | Polyketide, Saccharide | methymycin | Streptomyces venezuelae
BGC0000678.1 |  | 0.26 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001995.1 |  | 0.26 | Terpene | heptelidic acid | Aspergillus oryzae RIB40
BGC0000907.1 |  | 0.25 | Other | lincomycin | Streptomyces lincolnensis
BGC0000225.1 |  | 0.20 | Polyketide | frenolicin B | Streptomyces roseofulvus
BGC0000653.1 |  | 0.19 | Terpene | pentalenolactone | Streptomyces arenae

Similar known gene clusters
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No matches found.

Detailed Pfam domain annotation
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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