GCF_900095705.1_PRJEB15286_genomic - 2 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_LT608327.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	NRPS-like	350,771	390,798
Region 6.2	NRPS-like	398,480	440,948

Region	Type	From	To	Most similar known cluster	Similarity
Region 6.1	NRPS-like	350,771	390,798
Region 6.2	NRPS-like	398,480	440,948

No secondary metabolite regions were found in these records:: NZ_LT608322.1; NZ_LT608323.1; NZ_LT608324.1; NZ_LT608325.1; NZ_LT608326.1

Compact view

NZ_LT608327.1 - Region 1 - NRPS-like

Download region GenBank file

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Location: 350,771 - 390,798 nt. (total: 40,028 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001591.1	0.19	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.19	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001343.1	0.18	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001774.1	0.18	Other	spicamycin	Streptomyces fimbriatus
BGC0000410.1	0.17	NRP	pseudomonine	Pseudomonas fluorescens
BGC0001636.1	0.17	NRP	KK-1	Curvularia clavata
BGC0001796.1	0.16	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0000294.1	0.16	NRP	acinetobactin	Acinetobacter baumannii
BGC0001407.1	0.16	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000496.1	0.16	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001591.1	0.51	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.51	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001343.1	0.49	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001774.1	0.49	Other	spicamycin	Streptomyces fimbriatus
BGC0000410.1	0.49	NRP	pseudomonine	Pseudomonas fluorescens
BGC0001636.1	0.49	NRP	KK-1	Curvularia clavata
BGC0001796.1	0.47	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0000294.1	0.47	NRP	acinetobactin	Acinetobacter baumannii
BGC0001407.1	0.47	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000496.1	0.47	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 350770 - 390798:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_329

Search NORINE for peptide: strict or relaxed

AMP-binding (9..410): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: pLFivGGPiK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 60% (weak)

NZ_LT608327.1 - Region 2 - NRPS-like

Download region GenBank file

Download region SVG

Location: 398,480 - 440,948 nt. (total: 42,469 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000410.1	0.22	NRP	pseudomonine	Pseudomonas fluorescens
BGC0000287.1	0.17	NRP	L-2-amino-4-methoxy-trans-3-butenoic acid	Pseudomonas aeruginosa PAO1
BGC0000487.1	0.17	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000554.1	0.17	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001526.1	0.16	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000774.1	0.16	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001576.1	0.16	RiPP	divamide A	Prochloron didemni
BGC0000521.1	0.16	RiPP	lacticin 481	Lactococcus lactis subsp. lactis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000410.1	0.55	NRP	pseudomonine	Pseudomonas fluorescens
BGC0000287.1	0.49	NRP	L-2-amino-4-methoxy-trans-3-butenoic acid	Pseudomonas aeruginosa PAO1
BGC0000487.1	0.48	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000554.1	0.48	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001526.1	0.47	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000500.1	0.47	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000774.1	0.47	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001576.1	0.47	RiPP	divamide A	Prochloron didemni
BGC0000521.1	0.46	RiPP	lacticin 481	Lactococcus lactis subsp. lactis

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 398479 - 440948:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_371

Search NORINE for peptide: strict or relaxed

AMP-binding (6..412): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: iLgivGGPmK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)