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Overview
1.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JH932292.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | T3PKS | 56,268 | 97,485 |

NZ_JH932292.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
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Location: 56,268 - 97,485 nt. (total: 41,218 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000286.1 |  | 0.22 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0001210.1 |  | 0.16 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000626.1 |  | 0.16 | RiPP | thuricin | Bacillus thuringiensis
BGC0000205.1 |  | 0.16 | Polyketide | bryostatin | Candidatus Endobugula sertula
BGC0000948.1 |  | 0.15 | Other | α-galactosylceramide | Bacteroides fragilis NCTC 9343
BGC0001778.1 |  | 0.15 | Other | showdomycin | Streptomyces showdoensis
BGC0000805.1 |  | 0.15 | Saccharide | moenomycin | Streptomyces viridosporus ATCC 14672
BGC0001080.1 |  | 0.14 | Other (Phenazine) | endophenazine A, endophenazine B | Streptomyces anulatus
BGC0001104.1 |  | 0.14 | NRP, Polyketide | myxovirescin A1 | Myxococcus xanthus DK 1622
BGC0002005.1 |  | 0.14 | RiPP | RaxX | Xanthomonas oryzae pv. oryzae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000286.1 |  | 0.55 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0001210.1 |  | 0.47 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000626.1 |  | 0.46 | RiPP | thuricin | Bacillus thuringiensis
BGC0000205.1 |  | 0.46 | Polyketide | bryostatin | Candidatus Endobugula sertula
BGC0000948.1 |  | 0.46 | Other | α-galactosylceramide | Bacteroides fragilis NCTC 9343
BGC0001778.1 |  | 0.45 | Other | showdomycin | Streptomyces showdoensis
BGC0000805.1 |  | 0.45 | Saccharide | moenomycin | Streptomyces viridosporus ATCC 14672
BGC0001080.1 |  | 0.44 | Other (Phenazine) | endophenazine A, endophenazine B | Streptomyces anulatus
BGC0001104.1 |  | 0.44 | NRP, Polyketide | myxovirescin A1 | Myxococcus xanthus DK 1622
BGC0002005.1 |  | 0.44 | RiPP | RaxX | Xanthomonas oryzae pv. oryzae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names