GCF_001486585.1_Paenibacillus_senegalomassiliensis_genomic - 6 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_LN909041.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	arylpolyene	64,886	107,240	surfactin	NRP:Lipopeptide	13%

NZ_LN909042.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	ranthipeptide	191,952	214,701

NZ_LN909043.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	ranthipeptide	52,962	74,364

NZ_LN909045.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	proteusin	505,315	525,557

NZ_LN909046.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	hglE-KS	159,755	202,712
Region 15.2	siderophore	1,168,531	1,185,868

No secondary metabolite regions were found in these records:: NZ_LN909032.1; NZ_LN909033.1; NZ_LN909034.1; NZ_LN909035.1; NZ_LN909036.1; NZ_LN909037.1; NZ_LN909038.1; NZ_LN909039.1; NZ_LN909040.1; NZ_LN909044.1

Compact view

NZ_LN909041.1 - Region 1 - arylpolyene

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Location: 64,886 - 107,240 nt. (total: 42,355 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000245.1	0.29	Polyketide	medermycin	Streptomyces sp. AM-7161
BGC0001960.1	0.25	Polyketide	hiroshidine	Streptomyces hiroshimensis
BGC0002028.1	0.25	Polyketide	frigocyclinone	Streptomyces griseus
BGC0000221.1	0.24	Polyketide	erdacin	uncultured soil bacterium V167
BGC0000197.1	0.23	Polyketide, Saccharide	aranciamycin	Streptomyces echinatus
BGC0000880.1	0.23	Other (Nucleoside)	tunicamycin B1	Streptomyces chartreusis NRRL 3882
BGC0001897.1	0.22	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0000823.1	0.22	Alkaloid	rebeccamycin	Lechevalieria aerocolonigenes
BGC0000822.1	0.22	Alkaloid	rebeccamycin	Lechevalieria aerocolonigenes
BGC0000821.1	0.22	Other (Aminocoumarin)	rebeccamycin	Lechevalieria aerocolonigenes

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000245.1	0.63	Polyketide	medermycin	Streptomyces sp. AM-7161
BGC0001960.1	0.59	Polyketide	hiroshidine	Streptomyces hiroshimensis
BGC0002028.1	0.59	Polyketide	frigocyclinone	Streptomyces griseus
BGC0000221.1	0.58	Polyketide	erdacin	uncultured soil bacterium V167
BGC0000197.1	0.56	Polyketide, Saccharide	aranciamycin	Streptomyces echinatus
BGC0000880.1	0.56	Other (Nucleoside)	tunicamycin B1	Streptomyces chartreusis NRRL 3882
BGC0001897.1	0.55	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0000823.1	0.55	Alkaloid	rebeccamycin	Lechevalieria aerocolonigenes
BGC0000822.1	0.55	Alkaloid	rebeccamycin	Lechevalieria aerocolonigenes
BGC0000821.1	0.55	Other (Aminocoumarin)	rebeccamycin	Lechevalieria aerocolonigenes

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_LN909042.1 - Region 1 - ranthipeptide

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Location: 191,952 - 214,701 nt. (total: 22,750 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.22	RiPP	thurincin H	Bacillus thuringiensis
BGC0000599.1	0.18	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000528.1	0.16	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001526.1	0.16	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000488.1	0.16	RiPP	circularin A	Clostridium beijerinckii
BGC0000563.1	0.16	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001289.1	0.16	RiPP	penisin	Paenibacillus ehimensis
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000626.1	0.15	RiPP	thuricin	Bacillus thuringiensis
BGC0001210.1	0.15	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.55	RiPP	thurincin H	Bacillus thuringiensis
BGC0000599.1	0.50	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000528.1	0.47	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001526.1	0.46	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000488.1	0.46	RiPP	circularin A	Clostridium beijerinckii
BGC0000563.1	0.46	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001289.1	0.46	RiPP	penisin	Paenibacillus ehimensis
BGC0000487.1	0.46	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000626.1	0.46	RiPP	thuricin	Bacillus thuringiensis
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_LN909043.1 - Region 1 - ranthipeptide

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Location: 52,962 - 74,364 nt. (total: 21,403 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001929.1	0.23	RiPP	WGK	Streptococcus ferus
BGC0001779.1	0.19	RiPP	siamycin	Streptomyces nodosus
BGC0001551.1	0.19	RiPP	citrulassin E	Streptomyces glaucescens
BGC0000938.1	0.19	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000551.1	0.19	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000513.1	0.18	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000896.1	0.18	Other	cycloserine	Streptomyces lavendulae subsp. lavendulae
BGC0000509.1	0.18	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000244.1	0.17	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000501.1	0.17	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001929.1	0.56	RiPP	WGK	Streptococcus ferus
BGC0001779.1	0.51	RiPP	siamycin	Streptomyces nodosus
BGC0001551.1	0.51	RiPP	citrulassin E	Streptomyces glaucescens
BGC0000938.1	0.51	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000551.1	0.51	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000513.1	0.50	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000896.1	0.50	Other	cycloserine	Streptomyces lavendulae subsp. lavendulae
BGC0000509.1	0.49	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000244.1	0.48	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000501.1	0.48	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_LN909045.1 - Region 1 - proteusin

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Location: 505,315 - 525,557 nt. (total: 20,243 nt) Show pHMM detection rules used

proteusin: (PoyD or TIGR03793)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000487.1	0.17	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001525.1	0.17	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001526.1	0.17	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001407.1	0.16	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001639.1	0.16	RiPP	klebsidin	Klebsiella pneumoniae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000487.1	0.48	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001525.1	0.48	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001526.1	0.48	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001407.1	0.47	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000500.1	0.47	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000501.1	0.47	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000504.1	0.46	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001639.1	0.46	RiPP	klebsidin	Klebsiella pneumoniae

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_LN909046.1 - Region 1 - hglE-KS

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Location: 159,755 - 202,712 nt. (total: 42,958 nt) Show pHMM detection rules used

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000886.1	0.31	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0001909.1	0.31	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001292.1	0.20	Other	A33853	Streptomyces sp. NRRL 12068
BGC0001281.1	0.20	Polyketide	ustilagic acid	Ustilago maydis 521
BGC0001210.1	0.18	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000521.1	0.18	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001998.1	0.18	Polyketide	aspernidgulene A1, aspernidgulene A2, aspernidgulene B1	Aspergillus nidulans FGSC A4
BGC0000527.1	0.18	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0001788.1	0.18	RiPP	suicin 65	Streptococcus suis
BGC0000526.1	0.18	RiPP	macedocin	Streptococcus macedonicus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000886.1	0.64	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0001909.1	0.64	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001292.1	0.53	Other	A33853	Streptomyces sp. NRRL 12068
BGC0001281.1	0.52	Polyketide	ustilagic acid	Ustilago maydis 521
BGC0001210.1	0.50	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000521.1	0.50	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001998.1	0.50	Polyketide	aspernidgulene A1, aspernidgulene A2, aspernidgulene B1	Aspergillus nidulans FGSC A4
BGC0000527.1	0.49	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0001788.1	0.49	RiPP	suicin 65	Streptococcus suis
BGC0000526.1	0.49	RiPP	macedocin	Streptococcus macedonicus

Similar known gene clusters

No matches found.

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 159754 - 202712:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg15_150

PKS_AT (31..331): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 62.5%; Propionyl-CoA: 54.2%; inactive: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 58.6
Methoxymalonyl-CoA: 36.6
inactive: 28.6
Methylmalonyl-CoA: 25.1
Propionyl-CoA: 17.0
Benzoyl-CoA: 16.3
2-Methylbutyryl-CoA: 12.2
fatty_acid: 10.2
CHC-CoA: 10.2
Isobutyryl-CoA: 9.7
trans-1,2-CPDA: 0.0
Ethylmalonyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

NZ_LN909046.1 - Region 2 - siderophore

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Location: 1,168,531 - 1,185,868 nt. (total: 17,338 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001498.1	0.33	Other	aerobactin	Xenorhabdus szentirmaii DSM 16338
BGC0001453.1	0.32	Other	desferrioxamine	Streptomyces argillaceus
BGC0001572.1	0.32	Other	desferrioxamine E	Pantoea agglomerans
BGC0000295.1	0.29	NRP	acinetoferrin	Acinetobacter haemolyticus
BGC0000942.1	0.27	Other	petrobactin	Bacillus anthracis str. Ames
BGC0000853.1	0.25	Other	ectoine	Streptomyces anulatus
BGC0000946.1	0.25	Other	vibrioferrin	Vibrio parahaemolyticus
BGC0000858.1	0.25	Other	ectoine	Methylobacter marinus
BGC0000852.1	0.25	Other	ectoine	Sporosarcina pasteurii
BGC0000855.1	0.25	Other	ectoine	Methylomicrobium kenyense

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001498.1	0.66	Other	aerobactin	Xenorhabdus szentirmaii DSM 16338
BGC0001453.1	0.65	Other	desferrioxamine	Streptomyces argillaceus
BGC0001572.1	0.65	Other	desferrioxamine E	Pantoea agglomerans
BGC0000295.1	0.63	NRP	acinetoferrin	Acinetobacter haemolyticus
BGC0000942.1	0.61	Other	petrobactin	Bacillus anthracis str. Ames
BGC0000853.1	0.59	Other	ectoine	Streptomyces anulatus
BGC0000946.1	0.59	Other	vibrioferrin	Vibrio parahaemolyticus
BGC0000858.1	0.58	Other	ectoine	Methylobacter marinus
BGC0000852.1	0.58	Other	ectoine	Sporosarcina pasteurii
BGC0000855.1	0.58	Other	ectoine	Methylomicrobium kenyense

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names