Select genomic region:
Overview
1.1
34.1
39.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_QRYH01000001 (original name was: NZ_QRYH01000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ranthipeptide | 122,875 | 144,503 |

NZ_QRYH01000004 (original name was: NZ_QRYH01000004.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 34.1 | RiPP-like | 45,286 | 55,564 |

NZ_QRYH01000044 (original name was: NZ_QRYH01000044.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 39.1 | RRE-containing | 1 | 11,314 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ranthipeptide | 122,875 | 144,503 |
Region 34.1 | RiPP-like | 45,286 | 55,564 |
Region 39.1 | RRE-containing | 1 | 11,314 |

No secondary metabolite regions were found in these records:
  NZ_QRYH01000010 (original name was: NZ_QRYH01000010.1)
  NZ_QRYH01000011 (original name was: NZ_QRYH01000011.1)
  NZ_QRYH01000012 (original name was: NZ_QRYH01000012.1)
  NZ_QRYH01000013 (original name was: NZ_QRYH01000013.1)
  NZ_QRYH01000014 (original name was: NZ_QRYH01000014.1)
  NZ_QRYH01000015 (original name was: NZ_QRYH01000015.1)
  NZ_QRYH01000016 (original name was: NZ_QRYH01000016.1)
  NZ_QRYH01000017 (original name was: NZ_QRYH01000017.1)
  NZ_QRYH01000018 (original name was: NZ_QRYH01000018.1)
  NZ_QRYH01000019 (original name was: NZ_QRYH01000019.1)
  NZ_QRYH01000002 (original name was: NZ_QRYH01000002.1)
  NZ_QRYH01000020 (original name was: NZ_QRYH01000020.1)
  NZ_QRYH01000021 (original name was: NZ_QRYH01000021.1)
  NZ_QRYH01000022 (original name was: NZ_QRYH01000022.1)
  NZ_QRYH01000023 (original name was: NZ_QRYH01000023.1)
  NZ_QRYH01000024 (original name was: NZ_QRYH01000024.1)
  NZ_QRYH01000025 (original name was: NZ_QRYH01000025.1)
  NZ_QRYH01000026 (original name was: NZ_QRYH01000026.1)
  NZ_QRYH01000027 (original name was: NZ_QRYH01000027.1)
  NZ_QRYH01000028 (original name was: NZ_QRYH01000028.1)
  NZ_QRYH01000029 (original name was: NZ_QRYH01000029.1)
  NZ_QRYH01000003 (original name was: NZ_QRYH01000003.1)
  NZ_QRYH01000030 (original name was: NZ_QRYH01000030.1)
  NZ_QRYH01000031 (original name was: NZ_QRYH01000031.1)
  NZ_QRYH01000032 (original name was: NZ_QRYH01000032.1)
  NZ_QRYH01000033 (original name was: NZ_QRYH01000033.1)
  NZ_QRYH01000034 (original name was: NZ_QRYH01000034.1)
  NZ_QRYH01000035 (original name was: NZ_QRYH01000035.1)
  NZ_QRYH01000036 (original name was: NZ_QRYH01000036.1)
  NZ_QRYH01000037 (original name was: NZ_QRYH01000037.1)
  NZ_QRYH01000038 (original name was: NZ_QRYH01000038.1)
  NZ_QRYH01000039 (original name was: NZ_QRYH01000039.1)
  NZ_QRYH01000040 (original name was: NZ_QRYH01000040.1)
  NZ_QRYH01000041 (original name was: NZ_QRYH01000041.1)
  NZ_QRYH01000042 (original name was: NZ_QRYH01000042.1)
  NZ_QRYH01000043 (original name was: NZ_QRYH01000043.1)
  NZ_QRYH01000045 (original name was: NZ_QRYH01000045.1)
  NZ_QRYH01000046 (original name was: NZ_QRYH01000046.1)
  NZ_QRYH01000047 (original name was: NZ_QRYH01000047.1)
  NZ_QRYH01000048 (original name was: NZ_QRYH01000048.1)
  NZ_QRYH01000049 (original name was: NZ_QRYH01000049.1)
  NZ_QRYH01000005 (original name was: NZ_QRYH01000005.1)
  NZ_QRYH01000050 (original name was: NZ_QRYH01000050.1)
  NZ_QRYH01000051 (original name was: NZ_QRYH01000051.1)
  NZ_QRYH01000052 (original name was: NZ_QRYH01000052.1)
  NZ_QRYH01000053 (original name was: NZ_QRYH01000053.1)
  NZ_QRYH01000054 (original name was: NZ_QRYH01000054.1)
  NZ_QRYH01000055 (original name was: NZ_QRYH01000055.1)
  NZ_QRYH01000056 (original name was: NZ_QRYH01000056.1)
  NZ_QRYH01000057 (original name was: NZ_QRYH01000057.1)
  NZ_QRYH01000058 (original name was: NZ_QRYH01000058.1)
  NZ_QRYH01000059 (original name was: NZ_QRYH01000059.1)
  NZ_QRYH01000006 (original name was: NZ_QRYH01000006.1)
  NZ_QRYH01000060 (original name was: NZ_QRYH01000060.1)
  NZ_QRYH01000061 (original name was: NZ_QRYH01000061.1)
  NZ_QRYH01000062 (original name was: NZ_QRYH01000062.1)
  NZ_QRYH01000007 (original name was: NZ_QRYH01000007.1)
  NZ_QRYH01000008 (original name was: NZ_QRYH01000008.1)
  NZ_QRYH01000009 (original name was: NZ_QRYH01000009.1)

Compact view
c00001_NZ_QRYH.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 122,875 - 144,503 nt. (total: 21,629 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000599.1 |  | 0.16 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000504.1 |  | 0.16 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000571.1 |  | 0.16 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0000543.1 |  | 0.16 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000497.1 |  | 0.16 | RiPP | BHT-Aα, BHT-Aβ | Streptococcus ratti
BGC0000552.1 |  | 0.16 | RiPP | SmbA, SmbB | Streptococcus mutans
BGC0000514.1 |  | 0.16 | RiPP | gallidermin | Staphylococcus gallinarum
BGC0001494.1 |  | 0.16 | RiPP | acinetodin | Acinetobacter gyllenbergii CIP 110306
BGC0000563.1 |  | 0.16 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000599.1 |  | 0.47 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000504.1 |  | 0.47 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000571.1 |  | 0.47 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0000543.1 |  | 0.46 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000497.1 |  | 0.46 | RiPP | BHT-Aα, BHT-Aβ | Streptococcus ratti
BGC0000552.1 |  | 0.46 | RiPP | SmbA, SmbB | Streptococcus mutans
BGC0000514.1 |  | 0.46 | RiPP | gallidermin | Staphylococcus gallinarum
BGC0001494.1 |  | 0.46 | RiPP | acinetodin | Acinetobacter gyllenbergii CIP 110306
BGC0000563.1 |  | 0.46 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0000554.1 |  | 0.46 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00034_NZ_QRYH.. - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 45,286 - 55,564 nt. (total: 10,279 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001222.1 |  | 0.15 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.15 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000548.1 |  | 0.15 | RiPP | salivaricin A | Streptococcus salivarius
BGC0001120.1 |  | 0.15 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000294.1 |  | 0.15 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000916.1 |  | 0.14 | Other | molybdenum cofactor | Staphylococcus carnosus
BGC0001887.1 |  | 0.14 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000590.1 |  | 0.14 | RiPP | microcin N | Escherichia coli
BGC0000589.1 |  | 0.14 | RiPP | microcin M | Escherichia coli Nissle 1917

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000554.1 |  | 0.46 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001222.1 |  | 0.46 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.46 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000548.1 |  | 0.46 | RiPP | salivaricin A | Streptococcus salivarius
BGC0001120.1 |  | 0.45 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000294.1 |  | 0.44 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000916.1 |  | 0.44 | Other | molybdenum cofactor | Staphylococcus carnosus
BGC0001887.1 |  | 0.44 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000590.1 |  | 0.43 | RiPP | microcin N | Escherichia coli
BGC0000589.1 |  | 0.43 | RiPP | microcin M | Escherichia coli Nissle 1917

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00039_NZ_QRYH.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 11,314 nt. (total: 11,314 nt) Show pHMM detection rules used
Region on contig edge.
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000522.1 |  | 0.16 | RiPP | lacticin Z | Lactococcus lactis
BGC0000620.1 |  | 0.16 | RiPP | lacticin Q | Lactococcus lactis
BGC0001743.1 |  | 0.16 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000554.1 |  | 0.15 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000486.1 |  | 0.15 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0001222.1 |  | 0.15 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.15 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000494.1 |  | 0.15 | RiPP | uberolysin | Streptococcus uberis
BGC0001887.1 |  | 0.15 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001120.1 |  | 0.14 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000522.1 |  | 0.46 | RiPP | lacticin Z | Lactococcus lactis
BGC0000620.1 |  | 0.46 | RiPP | lacticin Q | Lactococcus lactis
BGC0001743.1 |  | 0.46 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000554.1 |  | 0.46 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000486.1 |  | 0.46 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0001222.1 |  | 0.46 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.46 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000494.1 |  | 0.46 | RiPP | uberolysin | Streptococcus uberis
BGC0001887.1 |  | 0.45 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001120.1 |  | 0.43 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names