GCF_900104415.1_IMG-taxon_2593339221_annotated_assembly_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_FMXR01000006 (original name was: NZ_FMXR01000006.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	NRPS-like	155,004	198,210

NZ_FMXR01000007 (original name was: NZ_FMXR01000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	RRE-containing	48,199	68,486

NZ_FMXR01000009 (original name was: NZ_FMXR01000009.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	RRE-containing	1	11,311	heme D1	Other	11%

NZ_FMXR01000014 (original name was: NZ_FMXR01000014.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	ranthipeptide	48,760	70,426

Region	Type	From	To	Most similar known cluster	Similarity
Region 8.1	NRPS-like	155,004	198,210
Region 16.1	RRE-containing	48,199	68,486
Region 18.1	RRE-containing	1	11,311	heme D1	Other	11%
Region 25.1	ranthipeptide	48,760	70,426

No secondary metabolite regions were found in these records:: NZ_FMXR01000031 (original name was: NZ_FMXR01000031.1); NZ_FMXR01000029 (original name was: NZ_FMXR01000029.1); NZ_FMXR01000032 (original name was: NZ_FMXR01000032.1); NZ_FMXR01000028 (original name was: NZ_FMXR01000028.1); NZ_FMXR01000027 (original name was: NZ_FMXR01000027.1); NZ_FMXR01000026 (original name was: NZ_FMXR01000026.1); NZ_FMXR01000010 (original name was: NZ_FMXR01000010.1); NZ_FMXR01000023 (original name was: NZ_FMXR01000023.1); NZ_FMXR01000005 (original name was: NZ_FMXR01000005.1); NZ_FMXR01000008 (original name was: NZ_FMXR01000008.1); NZ_FMXR01000015 (original name was: NZ_FMXR01000015.1); NZ_FMXR01000030 (original name was: NZ_FMXR01000030.1); NZ_FMXR01000022 (original name was: NZ_FMXR01000022.1); NZ_FMXR01000004 (original name was: NZ_FMXR01000004.1); NZ_FMXR01000020 (original name was: NZ_FMXR01000020.1); NZ_FMXR01000001 (original name was: NZ_FMXR01000001.1); NZ_FMXR01000012 (original name was: NZ_FMXR01000012.1); NZ_FMXR01000019 (original name was: NZ_FMXR01000019.1); NZ_FMXR01000025 (original name was: NZ_FMXR01000025.1); NZ_FMXR01000024 (original name was: NZ_FMXR01000024.1); NZ_FMXR01000013 (original name was: NZ_FMXR01000013.1); NZ_FMXR01000033 (original name was: NZ_FMXR01000033.1); NZ_FMXR01000017 (original name was: NZ_FMXR01000017.1); NZ_FMXR01000016 (original name was: NZ_FMXR01000016.1); NZ_FMXR01000018 (original name was: NZ_FMXR01000018.1); NZ_FMXR01000011 (original name was: NZ_FMXR01000011.1); NZ_FMXR01000021 (original name was: NZ_FMXR01000021.1)

Compact view

c00008_NZ_FMXR.. - Region 1 - NRPS-like

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Location: 155,004 - 198,210 nt. (total: 43,207 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001831.1	0.17	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000386.1	0.15	NRP	malleobactin A, malleobactin B, malleobactin C, malleobactin D	Burkholderia thailandensis E264
BGC0000781.1	0.14	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000666.1	0.14	Terpene	xiamycin A	Streptomyces sp. SCSIO 02999
BGC0000665.1	0.14	Terpene, Alkaloid	xiamycin	Streptomyces sp. HKI0576
BGC0001140.1	0.14	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0001156.1	0.14	Terpene	platencin	Streptomyces platensis
BGC0001897.1	0.14	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0001164.1	0.14	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0001160.1	0.14	Polyketide	1-nonadecene, (14Z)-1,14-nonadecadiene	Synechococcus sp. PCC 7002

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001831.1	0.48	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000386.1	0.44	NRP	malleobactin A, malleobactin B, malleobactin C, malleobactin D	Burkholderia thailandensis E264
BGC0000781.1	0.44	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000666.1	0.43	Terpene	xiamycin A	Streptomyces sp. SCSIO 02999
BGC0000665.1	0.43	Terpene, Alkaloid	xiamycin	Streptomyces sp. HKI0576
BGC0001140.1	0.43	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0001156.1	0.43	Terpene	platencin	Streptomyces platensis
BGC0001897.1	0.43	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0001164.1	0.43	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0001160.1	0.43	Polyketide	1-nonadecene, (14Z)-1,14-nonadecadiene	Synechococcus sp. PCC 7002

Similar known gene clusters

No matches found.

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 155003 - 198210:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg8_168

Search NORINE for peptide: strict or relaxed

AMP-binding (12..458): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: nLivmGGcLK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)

c00016_NZ_FMXR.. - Region 1 - RRE-containing

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Location: 48,199 - 68,486 nt. (total: 20,288 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001645.1	0.17	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0001634.1	0.16	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0000294.1	0.16	NRP	acinetobactin	Acinetobacter baumannii
BGC0001222.1	0.15	RiPP	acidocin B	Lactobacillus acidophilus
BGC0001929.1	0.15	RiPP	WGK	Streptococcus ferus
BGC0000491.1	0.15	RiPP	gassericin A	Lactobacillus gasseri
BGC0000592.1	0.15	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0001743.1	0.15	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000802.1	0.14	Saccharide	succinoglycan	Sinorhizobium meliloti
BGC0000584.1	0.14	RiPP	colicin V	Escherichia coli

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001645.1	0.47	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0001634.1	0.47	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0000294.1	0.46	NRP	acinetobactin	Acinetobacter baumannii
BGC0001222.1	0.46	RiPP	acidocin B	Lactobacillus acidophilus
BGC0001929.1	0.46	RiPP	WGK	Streptococcus ferus
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0000592.1	0.45	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0001743.1	0.45	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000802.1	0.44	Saccharide	succinoglycan	Sinorhizobium meliloti
BGC0000584.1	0.44	RiPP	colicin V	Escherichia coli

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00018_NZ_FMXR.. - Region 1 - RRE-containing

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Location: 1 - 11,311 nt. (total: 11,311 nt) Show pHMM detection rules used

Region on contig edge.

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000855.1	0.23	Other	ectoine	Methylomicrobium kenyense
BGC0000843.1	0.16	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0001747.1	0.14	Other	pseudaminic acid	Tannerella forsythia
BGC0000207.1	0.14	Polyketide	chartreusin	Streptomyces chartreusis
BGC0000919.1	0.14	Other	phaseolotoxin	Pseudomonas syringae
BGC0000905.1	0.13	Other	heme D1	Heliobacillus mobilis
BGC0000906.1	0.13	Other	heme D1	Heliophilum fasciatum
BGC0001599.1	0.13	NRP	fragin	Burkholderia cenocepacia H111
BGC0000663.1	0.11	Terpene	hopene	Streptomyces coelicolor A3(2)
BGC0000723.1	0.11	Saccharide	β-D-galactosylvalidoxylamine-A	Streptomyces hygroscopicus subsp. limoneus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000855.1	0.56	Other	ectoine	Methylomicrobium kenyense
BGC0000843.1	0.47	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0001747.1	0.44	Other	pseudaminic acid	Tannerella forsythia
BGC0000207.1	0.44	Polyketide	chartreusin	Streptomyces chartreusis
BGC0000919.1	0.43	Other	phaseolotoxin	Pseudomonas syringae
BGC0000905.1	0.42	Other	heme D1	Heliobacillus mobilis
BGC0000906.1	0.42	Other	heme D1	Heliophilum fasciatum
BGC0001599.1	0.41	NRP	fragin	Burkholderia cenocepacia H111
BGC0000663.1	0.38	Terpene	hopene	Streptomyces coelicolor A3(2)
BGC0000723.1	0.37	Saccharide	β-D-galactosylvalidoxylamine-A	Streptomyces hygroscopicus subsp. limoneus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00025_NZ_FMXR.. - Region 1 - ranthipeptide

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Location: 48,760 - 70,426 nt. (total: 21,667 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000695.1	0.09	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000807.1	0.08	Saccharide	phosphonoglycans	Stackebrandtia nassauensis DSM 44728
BGC0000376.1	0.04	NRP	JBIR-34, JBIR-35	Streptomyces sp. Sp080513GE-23
BGC0000118.1	0.04	Polyketide	pactamycin	Streptomyces pactum
BGC0000413.1	0.04	NRP	pyoverdin	Pseudomonas protegens Pf-5
BGC0001961.1	0.04	NRP	ashimides	Streptomyces sp.
BGC0000119.1	0.03	Polyketide, Saccharide	7-deoxypactamycin	Streptomyces pactum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000695.1	0.34	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000807.1	0.32	Saccharide	phosphonoglycans	Stackebrandtia nassauensis DSM 44728
BGC0000376.1	0.17	NRP	JBIR-34, JBIR-35	Streptomyces sp. Sp080513GE-23
BGC0000118.1	0.17	Polyketide	pactamycin	Streptomyces pactum
BGC0000413.1	0.17	NRP	pyoverdin	Pseudomonas protegens Pf-5
BGC0001961.1	0.17	NRP	ashimides	Streptomyces sp.
BGC0000119.1	0.16	Polyketide, Saccharide	7-deoxypactamycin	Streptomyces pactum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names