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Overview
1.1
1.2
1.3
1.4
2.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CCAX010000001 (original name was: NZ_CCAX010000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS | 480,968 | 519,431 |
Region 1.2 | betalactone | 520,762 | 544,903 | fengycin | NRP | 46%
Region 1.3 | ectoine | 875,429 | 885,815 | ectoine | Other | 75%
Region 1.4 | T3PKS,terpene | 943,589 | 1,000,416 | chejuenolide A / chejuenolide B | Polyketide | 7%

NZ_CCAX010000002 (original name was: NZ_CCAX010000002.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | terpene | 144,319 | 165,137 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS | 480,968 | 519,431 |
Region 1.2 | betalactone | 520,762 | 544,903 | fengycin | NRP | 46%
Region 1.3 | ectoine | 875,429 | 885,815 | ectoine | Other | 75%
Region 1.4 | T3PKS,terpene | 943,589 | 1,000,416 | chejuenolide A / chejuenolide B | Polyketide | 7%
Region 2.1 | terpene | 144,319 | 165,137 |

No secondary metabolite regions were found in these records:
  NZ_CCAX010000003 (original name was: NZ_CCAX010000003.1)
  NZ_CCAX010000004 (original name was: NZ_CCAX010000004.1)
  NZ_CCAX010000005 (original name was: NZ_CCAX010000005.1)

Compact view
c00001_NZ_CCAX.. - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 480,968 - 519,431 nt. (total: 38,464 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.35 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001454.1 |  | 0.31 | Other | germicidin | Streptomyces argillaceus
BGC0001962.1 |  | 0.31 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001831.1 |  | 0.22 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001156.1 |  | 0.20 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.20 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000905.1 |  | 0.20 | Other | heme D1 | Heliobacillus mobilis
BGC0000896.1 |  | 0.17 | Other | cycloserine | Streptomyces lavendulae subsp. lavendulae
BGC0000774.1 |  | 0.15 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001587.1 |  | 0.14 | Other | ethylenediaminesuccinic acid hydroxyarginine (EDHA) | Streptomyces avermitilis MA-4680 = NBRC 14893

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.68 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001454.1 |  | 0.65 | Other | germicidin | Streptomyces argillaceus
BGC0001962.1 |  | 0.64 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001831.1 |  | 0.55 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001156.1 |  | 0.52 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.52 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000905.1 |  | 0.52 | Other | heme D1 | Heliobacillus mobilis
BGC0000896.1 |  | 0.48 | Other | cycloserine | Streptomyces lavendulae subsp. lavendulae
BGC0000774.1 |  | 0.46 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001587.1 |  | 0.44 | Other | ethylenediaminesuccinic acid hydroxyarginine (EDHA) | Streptomyces avermitilis MA-4680 = NBRC 14893

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_CCAX.. - Region 2 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 520,762 - 544,903 nt. (total: 24,142 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000234.1 |  | 0.20 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001465.1 |  | 0.20 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000890.1 |  | 0.20 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000891.1 |  | 0.20 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0001897.1 |  | 0.18 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000938.1 |  | 0.18 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0000500.1 |  | 0.16 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000504.1 |  | 0.16 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000768.1 |  | 0.16 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461
BGC0002034.1 |  | 0.16 | Other | perquinoline A, perquinoline B, perquinoline C | Streptomyces sp. IB2014 016-6

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000234.1 |  | 0.53 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001465.1 |  | 0.53 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000890.1 |  | 0.52 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000891.1 |  | 0.52 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0001897.1 |  | 0.49 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000938.1 |  | 0.49 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0000500.1 |  | 0.47 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000504.1 |  | 0.47 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000768.1 |  | 0.47 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461
BGC0002034.1 |  | 0.47 | Other | perquinoline A, perquinoline B, perquinoline C | Streptomyces sp. IB2014 016-6

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_CCAX.. - Region 3 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 875,429 - 885,815 nt. (total: 10,387 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000855.1 |  | 0.41 | Other | ectoine | Methylomicrobium kenyense
BGC0000858.1 |  | 0.41 | Other | ectoine | Methylobacter marinus
BGC0000852.1 |  | 0.40 | Other | ectoine | Sporosarcina pasteurii
BGC0000859.1 |  | 0.33 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.33 | Other | ectoine | Methylophaga thalassica
BGC0000853.1 |  | 0.32 | Other | ectoine | Streptomyces anulatus
BGC0000860.1 |  | 0.31 | Other | ectoine | Methylarcula marina
BGC0000857.1 |  | 0.27 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.25 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000895.1 |  | 0.14 | Other | citrulline | Lactobacillus plantarum subsp. plantarum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000855.1 |  | 0.73 | Other | ectoine | Methylomicrobium kenyense
BGC0000858.1 |  | 0.73 | Other | ectoine | Methylobacter marinus
BGC0000852.1 |  | 0.72 | Other | ectoine | Sporosarcina pasteurii
BGC0000859.1 |  | 0.66 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.66 | Other | ectoine | Methylophaga thalassica
BGC0000853.1 |  | 0.66 | Other | ectoine | Streptomyces anulatus
BGC0000860.1 |  | 0.64 | Other | ectoine | Methylarcula marina
BGC0000857.1 |  | 0.60 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.59 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000895.1 |  | 0.43 | Other | citrulline | Lactobacillus plantarum subsp. plantarum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_CCAX.. - Region 4 - T3PKS,terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 943,589 - 1,000,416 nt. (total: 56,828 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0000647.1 |  |  | 0.45 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0001948.1 |  |  | 0.33 | Other | naseseazine C, C3-aryl pyrroloindolines | Streptomyces sp.
BGC0001927.1 |  |  | 0.30 | Other | A-94964 | Streptomyces sp.
BGC0000666.1 |  |  | 0.28 | Terpene | xiamycin A | Streptomyces sp. SCSIO 02999
BGC0000207.1 |  |  | 0.26 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001302.1 |  |  | 0.26 | Other | lomofungin | Streptomyces lomondensis
BGC0001440.1 |  |  | 0.25 | Other | cystargolide A, cystargolide B | Kitasatospora cystarginea
BGC0001964.1 |  |  | 0.25 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Cystobacterineae bacterium
BGC0000648.1 |  |  | 0.25 | Terpene | carotenoid | Myxococcus xanthus
BGC0000219.1 |  |  | 0.23 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.76 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.58 | Terpene | carotenoid | Myxococcus xanthus
BGC0000634.1 |  | 0.58 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.58 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000656.1 |  | 0.57 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000640.1 |  | 0.57 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000664.1 |  | 0.57 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001456.1 |  | 0.57 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000633.1 |  | 0.57 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001227.1 |  | 0.56 | Terpene | isorenieratene | Streptomyces collinus Tu 365

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00002_NZ_CCAX.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 144,319 - 165,137 nt. (total: 20,819 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001839.1 |  | 0.31 | Terpene | squalestatin S1 | Aspergillus sp. Z5
BGC0000895.1 |  | 0.16 | Other | citrulline | Lactobacillus plantarum subsp. plantarum
BGC0000766.1 |  | 0.14 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000883.1 |  | 0.14 | Other | arginomycin | Streptomyces arginensis
BGC0000430.1 |  | 0.11 | NRP, Polyketide | spumigin E | Nodularia spumigena CCY9414
BGC0001940.1 |  | 0.11 | Polyketide | pyxidicycline A, pyxidicycline B | Pyxidicoccus fallax
BGC0000343.1 |  | 0.10 | NRP | enterobactin | Pseudomonas sp. J465
BGC0000926.1 |  | 0.10 | Other | rhizocticin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001449.1 |  | 0.10 | NRP, Polyketide, Alkaloid | ucs1025a | Thermothelomyces thermophilus
BGC0000433.1 |  | 0.10 | NRP | surfactin | Bacillus velezensis FZB42

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001839.1 |  | 0.65 | Terpene | squalestatin S1 | Aspergillus sp. Z5
BGC0000895.1 |  | 0.47 | Other | citrulline | Lactobacillus plantarum subsp. plantarum
BGC0000766.1 |  | 0.43 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000883.1 |  | 0.43 | Other | arginomycin | Streptomyces arginensis
BGC0000430.1 |  | 0.38 | NRP, Polyketide | spumigin E | Nodularia spumigena CCY9414
BGC0001940.1 |  | 0.38 | Polyketide | pyxidicycline A, pyxidicycline B | Pyxidicoccus fallax
BGC0000343.1 |  | 0.36 | NRP | enterobactin | Pseudomonas sp. J465
BGC0000926.1 |  | 0.36 | Other | rhizocticin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001449.1 |  | 0.36 | NRP, Polyketide, Alkaloid | ucs1025a | Thermothelomyces thermophilus
BGC0000433.1 |  | 0.35 | NRP | surfactin | Bacillus velezensis FZB42

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names