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Overview
1.1
1.2
1.3
1.4
1.5

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP072387.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS,siderophore | 1,333,332 | 1,374,510 | alkylresorcinol | Polyketide | 100%
Region 1.2 | terpene | 2,842,771 | 2,863,685 | 7-deoxypactamycin | Polyketide:Iterative type I + Saccharide:Hybrid/tailoring | 5%
Region 1.3 | RiPP-like | 3,194,712 | 3,203,313 |
Region 1.4 | thioamide-NRP | 3,435,937 | 3,482,149 |
Region 1.5 | RiPP-like | 3,967,134 | 3,977,430 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS,siderophore | 1,333,332 | 1,374,510 | alkylresorcinol | Polyketide | 100%
Region 1.2 | terpene | 2,842,771 | 2,863,685 | 7-deoxypactamycin | Polyketide:Iterative type I + Saccharide:Hybrid/tailoring | 5%
Region 1.3 | RiPP-like | 3,194,712 | 3,203,313 |
Region 1.4 | thioamide-NRP | 3,435,937 | 3,482,149 |
Region 1.5 | RiPP-like | 3,967,134 | 3,977,430 |

No secondary metabolite regions were found in these records:
  NZ_CP072388.1

Compact view
NZ_CP072387.1 - Region 1 - T3PKS,siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,333,332 - 1,374,510 nt. (total: 41,179 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0001572.1 |  |  | 0.71 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001478.1 |  |  | 0.65 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  |  | 0.64 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001453.1 |  |  | 0.53 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000940.1 |  |  | 0.53 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0000282.1 |  |  | 0.41 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001499.1 |  |  | 0.37 | Other | aerobactin | Pantoea ananatis
BGC0001531.1 |  |  | 0.36 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0000942.1 |  |  | 0.36 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0001713.1 |  |  | 0.34 | Other | ochrobactin | Ochrobactrum anthropi

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.73 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001572.1 |  | 0.68 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001478.1 |  | 0.66 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.66 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001453.1 |  | 0.60 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000940.1 |  | 0.60 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001077.1 |  | 0.57 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0001310.1 |  | 0.54 | Terpene | naringenin | Streptomyces clavuligerus ATCC 27064
BGC0000902.1 |  | 0.54 | Other | flaviolin | Saccharopolyspora erythraea NRRL 2338
BGC0000942.1 |  | 0.53 | Other | petrobactin | Bacillus anthracis str. Ames

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072387.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,842,771 - 2,863,685 nt. (total: 20,915 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.34 | Terpene | carotenoid | Myxococcus xanthus
BGC0000647.1 |  | 0.32 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000637.1 |  | 0.25 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000650.1 |  | 0.25 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000644.1 |  | 0.23 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000636.1 |  | 0.18 | Terpene | carotenoid | Brevibacterium linens
BGC0000643.1 |  | 0.17 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000786.1 |  | 0.16 | Saccharide | O-antigen | Edwardsiella ictaluri 93-146
BGC0000782.1 |  | 0.16 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b
BGC0000761.1 |  | 0.16 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.67 | Terpene | carotenoid | Myxococcus xanthus
BGC0000647.1 |  | 0.65 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000637.1 |  | 0.59 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000650.1 |  | 0.59 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000644.1 |  | 0.56 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000636.1 |  | 0.50 | Terpene | carotenoid | Brevibacterium linens
BGC0000643.1 |  | 0.48 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000786.1 |  | 0.47 | Saccharide | O-antigen | Edwardsiella ictaluri 93-146
BGC0000782.1 |  | 0.47 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b
BGC0000761.1 |  | 0.47 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072387.1 - Region 3 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,194,712 - 3,203,313 nt. (total: 8,602 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001535.1 |  | 0.22 | Other | branched-chain fatty acids | Streptomyces filamentosus
BGC0001896.1 |  | 0.19 | Other | carbazomycin B | Streptomyces luteoverticillatus
BGC0001374.1 |  | 0.17 | Other | thienodolin | Streptomyces albogriseolus
BGC0001206.1 |  | 0.17 | Other | indolmycin | Streptomyces griseus subsp. griseus
BGC0000554.1 |  | 0.17 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001551.1 |  | 0.16 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0000504.1 |  | 0.15 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001534.1 |  | 0.15 | Other | branched-chain fatty acids | Streptomyces filamentosus
BGC0000500.1 |  | 0.15 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000703.1 |  | 0.15 | Saccharide | kanamycin | Streptomyces kanamyceticus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001535.1 |  | 0.54 | Other | branched-chain fatty acids | Streptomyces filamentosus
BGC0001896.1 |  | 0.51 | Other | carbazomycin B | Streptomyces luteoverticillatus
BGC0001374.1 |  | 0.48 | Other | thienodolin | Streptomyces albogriseolus
BGC0001206.1 |  | 0.48 | Other | indolmycin | Streptomyces griseus subsp. griseus
BGC0000554.1 |  | 0.48 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001551.1 |  | 0.47 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0000504.1 |  | 0.46 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001534.1 |  | 0.46 | Other | branched-chain fatty acids | Streptomyces filamentosus
BGC0000500.1 |  | 0.45 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000703.1 |  | 0.45 | Saccharide | kanamycin | Streptomyces kanamyceticus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072387.1 - Region 4 - thioamide-NRP
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,435,937 - 3,482,149 nt. (total: 46,213 nt) Show pHMM detection rules used
thioamide-NRP: (ATP-grasp and AMP-binding and PP-binding and (DUF98 or Orn_Arg_deC_N or Orn_DAP_Arg_deC))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | thioamide-NRP | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001302.1 |  | 0.27 | Other | lomofungin | Streptomyces lomondensis
BGC0001778.1 |  | 0.26 | Other | showdomycin | Streptomyces showdoensis
BGC0001831.1 |  | 0.24 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000694.1 |  | 0.23 | Saccharide | butirosin | Bacillus circulans
BGC0000260.1 |  | 0.23 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0001538.1 |  | 0.23 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0001366.1 |  | 0.21 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000220.1 |  | 0.21 | Polyketide | enterocin | Streptomyces maritimus
BGC0001131.1 |  | 0.21 | NRP | ambactin | Xenorhabdus miraniensis
BGC0001964.1 |  | 0.21 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Cystobacterineae bacterium

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001302.1 |  | 0.60 | Other | lomofungin | Streptomyces lomondensis
BGC0001778.1 |  | 0.60 | Other | showdomycin | Streptomyces showdoensis
BGC0001831.1 |  | 0.57 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000694.1 |  | 0.56 | Saccharide | butirosin | Bacillus circulans
BGC0000260.1 |  | 0.56 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0001538.1 |  | 0.56 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0001366.1 |  | 0.54 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000220.1 |  | 0.54 | Polyketide | enterocin | Streptomyces maritimus
BGC0001131.1 |  | 0.53 | NRP | ambactin | Xenorhabdus miraniensis
BGC0001964.1 |  | 0.53 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Cystobacterineae bacterium

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072387.1 - Region 5 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,967,134 - 3,977,430 nt. (total: 10,297 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001191.1 |  | 0.24 | Other | A-102395 | Amycolatopsis sp. SANK 60206
BGC0000513.1 |  | 0.17 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000504.1 |  | 0.16 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001407.1 |  | 0.15 | RiPP | bicereucin | Bacillus cereus SJ1
BGC0000207.1 |  | 0.15 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001120.1 |  | 0.15 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000019.1 |  | 0.14 | Polyketide | angolamycin | Streptomyces eurythermus
BGC0000294.1 |  | 0.14 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000882.1 |  | 0.14 | Other | mildiomycin | Streptomyces rimofaciens

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001191.1 |  | 0.58 | Other | A-102395 | Amycolatopsis sp. SANK 60206
BGC0000513.1 |  | 0.48 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000504.1 |  | 0.47 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000554.1 |  | 0.46 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001407.1 |  | 0.46 | RiPP | bicereucin | Bacillus cereus SJ1
BGC0000207.1 |  | 0.45 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001120.1 |  | 0.45 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000019.1 |  | 0.44 | Polyketide | angolamycin | Streptomyces eurythermus
BGC0000294.1 |  | 0.44 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000882.1 |  | 0.44 | Other | mildiomycin | Streptomyces rimofaciens

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names