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Overview
1.1
1.2
1.3

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_KK211188.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 693,087 | 713,494 |
Region 1.2 | siderophore | 1,956,774 | 1,970,104 |
Region 1.3 | terpene | 2,390,876 | 2,411,703 | carotenoid | Terpene | 33%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 693,087 | 713,494 |
Region 1.2 | siderophore | 1,956,774 | 1,970,104 |
Region 1.3 | terpene | 2,390,876 | 2,411,703 | carotenoid | Terpene | 33%

No secondary metabolite regions were found in these records:
  NZ_JHZU01000007 (original name was: NZ_JHZU01000007.1)
  NZ_JHZU01000008 (original name was: NZ_JHZU01000008.1)
  NZ_JHZU01000009 (original name was: NZ_JHZU01000009.1)

Compact view
NZ_KK211188.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 693,087 - 713,494 nt. (total: 20,408 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000928.1 |  | 0.14 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.14 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3
BGC0000903.1 |  | 0.14 | Other | fluorometabolite | Streptomyces cattleya
BGC0000550.1 |  | 0.14 | RiPP | salivaricin G32 | Streptococcus salivarius
BGC0001928.1 |  | 0.14 | Other | (2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid | Streptomyces sp. MA37
BGC0000883.1 |  | 0.13 | Other | arginomycin | Streptomyces arginensis
BGC0000874.1 |  | 0.13 | Other | blasticidin S | Streptomyces griseochromogenes
BGC0000528.1 |  | 0.13 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000516.1 |  | 0.13 | RiPP | geobacillin II | Geobacillus thermodenitrificans
BGC0001810.1 |  | 0.13 | Polyketide | trehangelin | Polymorphospora rubra

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000928.1 |  | 0.43 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.43 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3
BGC0000903.1 |  | 0.43 | Other | fluorometabolite | Streptomyces cattleya
BGC0000550.1 |  | 0.43 | RiPP | salivaricin G32 | Streptococcus salivarius
BGC0001928.1 |  | 0.43 | Other | (2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid | Streptomyces sp. MA37
BGC0000883.1 |  | 0.42 | Other | arginomycin | Streptomyces arginensis
BGC0000874.1 |  | 0.42 | Other | blasticidin S | Streptomyces griseochromogenes
BGC0000528.1 |  | 0.42 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000516.1 |  | 0.41 | RiPP | geobacillin II | Geobacillus thermodenitrificans
BGC0001810.1 |  | 0.41 | Polyketide | trehangelin | Polymorphospora rubra

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_KK211188.1 - Region 2 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,956,774 - 1,970,104 nt. (total: 13,331 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000942.1 |  | 0.35 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0000295.1 |  | 0.33 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0001713.1 |  | 0.32 | Other | ochrobactin | Ochrobactrum anthropi
BGC0000946.1 |  | 0.23 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0001870.1 |  | 0.22 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000410.1 |  | 0.19 | NRP | pseudomonine | Pseudomonas fluorescens
BGC0000939.1 |  | 0.18 | Other | aerobactin | Grimontia hollisae
BGC0000349.1 |  | 0.18 | NRP | erythrochelin | Saccharopolyspora erythraea NRRL 2338
BGC0001767.1 |  | 0.17 | NRP | salinichelins | Salinispora pacifica CNY331
BGC0001211.1 |  | 0.16 | NRP | albachelin | Amycolatopsis alba DSM 44262

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000942.1 |  | 0.68 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0000295.1 |  | 0.66 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0001713.1 |  | 0.65 | Other | ochrobactin | Ochrobactrum anthropi
BGC0000946.1 |  | 0.56 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0001870.1 |  | 0.55 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000410.1 |  | 0.51 | NRP | pseudomonine | Pseudomonas fluorescens
BGC0000939.1 |  | 0.50 | Other | aerobactin | Grimontia hollisae
BGC0000349.1 |  | 0.49 | NRP | erythrochelin | Saccharopolyspora erythraea NRRL 2338
BGC0001767.1 |  | 0.49 | NRP | salinichelins | Salinispora pacifica CNY331
BGC0001211.1 |  | 0.47 | NRP | albachelin | Amycolatopsis alba DSM 44262

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
NZ_KK211188.1 - Region 3 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,390,876 - 2,411,703 nt. (total: 20,828 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000645.1 |  | 0.49 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000647.1 |  | 0.34 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0001456.1 |  | 0.22 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000664.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000648.1 |  | 0.21 | Terpene | carotenoid | Myxococcus xanthus
BGC0000633.1 |  | 0.21 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001227.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000656.1 |  | 0.20 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000636.1 |  | 0.20 | Terpene | carotenoid | Brevibacterium linens
BGC0000640.1 |  | 0.18 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000645.1 |  | 0.78 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000647.1 |  | 0.67 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0001456.1 |  | 0.55 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000664.1 |  | 0.54 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000648.1 |  | 0.54 | Terpene | carotenoid | Myxococcus xanthus
BGC0000633.1 |  | 0.54 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001227.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000656.1 |  | 0.53 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000636.1 |  | 0.53 | Terpene | carotenoid | Brevibacterium linens
BGC0000640.1 |  | 0.50 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names