GCF_900092335.1_PRJEB14666_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_LT596207.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NAPAA	114,020	147,934
Region 1.2	T1PKS	248,658	293,517

NZ_LT596208.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS	106,566	149,271
Region 2.2	terpene	1,879,078	1,895,604	carotenoid	Terpene	25%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	NAPAA	114,020	147,934
Region 1.2	T1PKS	248,658	293,517
Region 2.1	NRPS	106,566	149,271
Region 2.2	terpene	1,879,078	1,895,604	carotenoid	Terpene	25%

No secondary metabolite regions were found in these records:: NZ_LT596209.1; NZ_LT596210.1; NZ_LT596211.1; NZ_LT596212.1; NZ_LT596213.1; NZ_LT596214.1; NZ_LT596215.1; NZ_LT596216.1; NZ_LT596217.1; NZ_LT596219.1; NZ_LT596220.1

Compact view

NZ_LT596207.1 - Region 1 - NAPAA

Download region GenBank file

Download region SVG

Location: 114,020 - 147,934 nt. (total: 33,915 nt) Show pHMM detection rules used

NAPAA: (AMP-binding and PP-binding and TIGR02353)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.20	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001128.1	0.18	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001758.1	0.18	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.18	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.18	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000375.1	0.18	NRP	indigoidine	Streptomyces chromofuscus
BGC0001135.1	0.18	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001168.1	0.18	NRP	livipeptin	Streptomyces lividans 1326
BGC0001479.1	0.18	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000879.1	0.18	Other	toyocamycin, sangivamycin	Streptomyces rimosus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001128.1	0.50	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001758.1	0.50	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.50	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.50	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000375.1	0.49	NRP	indigoidine	Streptomyces chromofuscus
BGC0001135.1	0.49	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001168.1	0.49	NRP	livipeptin	Streptomyces lividans 1326
BGC0001479.1	0.49	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000879.1	0.49	Other	toyocamycin, sangivamycin	Streptomyces rimosus

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 114019 - 147934:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_140

Search NORINE for peptide: strict or relaxed

AMP-binding (45..417): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAESIGtVvK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 80% (moderate)

NZ_LT596207.1 - Region 2 - T1PKS

Download region GenBank file

Download region SVG

Location: 248,658 - 293,517 nt. (total: 44,860 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001909.1	0.32	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001831.1	0.24	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000044.1	0.21	Polyketide	dawenol	Stigmatella aurantiaca DW4/3-1
BGC0001264.1	0.19	Polyketide	betaenone A, betaenone B, betaenone C	Phoma betae
BGC0001280.1	0.19	Polyketide	betaenone C, betaenone A	Phoma betae
BGC0001276.1	0.19	Polyketide	6-methylsalicyclic acid	Aspergillus terreus
BGC0001273.1	0.19	Polyketide	asperlactone	Aspergillus ochraceus
BGC0001275.1	0.19	Polyketide	6-methylsalicyclic acid	Glarea lozoyensis
BGC0001244.1	0.19	Polyketide	(-)-Mellein	Parastagonospora nodorum
BGC0001998.1	0.19	Polyketide	aspernidgulene A1, aspernidgulene A2, aspernidgulene B1	Aspergillus nidulans FGSC A4

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001909.1	0.65	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001831.1	0.57	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000044.1	0.54	Polyketide	dawenol	Stigmatella aurantiaca DW4/3-1
BGC0001264.1	0.51	Polyketide	betaenone A, betaenone B, betaenone C	Phoma betae
BGC0001280.1	0.51	Polyketide	betaenone C, betaenone A	Phoma betae
BGC0001276.1	0.51	Polyketide	6-methylsalicyclic acid	Aspergillus terreus
BGC0001273.1	0.51	Polyketide	asperlactone	Aspergillus ochraceus
BGC0001275.1	0.51	Polyketide	6-methylsalicyclic acid	Glarea lozoyensis
BGC0001244.1	0.51	Polyketide	(-)-Mellein	Parastagonospora nodorum
BGC0001998.1	0.50	Polyketide	aspernidgulene A1, aspernidgulene A2, aspernidgulene B1	Aspergillus nidulans FGSC A4

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 248657 - 293517:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_258

PKS_AT (646..929): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 58.3%

minowa: fatty_acid

Prediction, score:

fatty_acid: 112.3
Methoxymalonyl-CoA: 61.3
Methylmalonyl-CoA: 60.9
Malonyl-CoA: 41.7
trans-1,2-CPDA: 35.4
Ethylmalonyl-CoA: 32.6
Propionyl-CoA: 28.6
Isobutyryl-CoA: 23.1
2-Methylbutyryl-CoA: 16.3
CHC-CoA: 15.6
Acetyl-CoA: 13.4
inactive: 0.0
Benzoyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg1_260

CAL_domain (66..539): pk

minowa: Acetyl-CoA

Prediction, score:

Acetyl-CoA: 14.8
NH2: 13.9
AHBA: 7.5
fatty_acid: 7.2
shikimic_acid: 0.0

NZ_LT596208.1 - Region 1 - NRPS

Download region GenBank file

Download region SVG

Location: 106,566 - 149,271 nt. (total: 42,706 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001636.1	0.22	NRP	KK-1	Curvularia clavata
BGC0001699.1	0.21	Polyketide	nidulanin A	Aspergillus nidulans FGSC A4
BGC0000313.1	0.21	NRP	beauvericin	Beauveria bassiana
BGC0001825.1	0.21	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000375.1	0.21	NRP	indigoidine	Streptomyces chromofuscus
BGC0001758.1	0.21	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.21	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000427.1	0.21	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001844.1	0.20	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000900.1	0.20	Other	ferrichrome	Aspergillus oryzae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001636.1	0.55	NRP	KK-1	Curvularia clavata
BGC0001699.1	0.54	Polyketide	nidulanin A	Aspergillus nidulans FGSC A4
BGC0000313.1	0.54	NRP	beauvericin	Beauveria bassiana
BGC0001825.1	0.54	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000375.1	0.54	NRP	indigoidine	Streptomyces chromofuscus
BGC0001758.1	0.53	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.53	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001844.1	0.53	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000900.1	0.53	Other	ferrichrome	Aspergillus oryzae

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 106565 - 149271:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_118

Search NORINE for peptide: strict or relaxed

AMP-binding (327..722): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSaIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

NZ_LT596208.1 - Region 2 - terpene

Download region GenBank file

Download region SVG

Location: 1,879,078 - 1,895,604 nt. (total: 16,527 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.28	Terpene	carotenoid	Myxococcus xanthus
BGC0000650.1	0.22	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000643.1	0.20	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000634.1	0.20	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000656.1	0.18	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000637.1	0.18	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000633.1	0.18	Terpene	carotenoid	Streptomyces avermitilis
BGC0000664.1	0.18	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000644.1	0.17	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000548.1	0.16	RiPP	salivaricin A	Streptococcus salivarius

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.62	Terpene	carotenoid	Myxococcus xanthus
BGC0000650.1	0.55	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000643.1	0.53	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000634.1	0.53	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000656.1	0.50	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000637.1	0.50	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000633.1	0.49	Terpene	carotenoid	Streptomyces avermitilis
BGC0000664.1	0.49	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000644.1	0.48	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000548.1	0.47	RiPP	salivaricin A	Streptococcus salivarius

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names