GCF_001025155.1_ASM102515v1_genomic - 1 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_AP012322.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	lanthipeptide-class-ii	1,383,979	1,407,089

NZ_AP012322.1 - Region 1 - lanthipeptide-class-ii

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Location: 1,383,979 - 1,407,089 nt. (total: 23,111 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.32	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000516.1	0.28	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000504.1	0.28	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000539.1	0.28	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000528.1	0.28	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000500.1	0.27	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000502.1	0.25	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000521.1	0.25	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000561.1	0.25	RiPP	thermophilin 1277	Streptococcus thermophilus
BGC0000498.1	0.25	RiPP	bovicin HJ50	Streptococcus equinus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.65	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000516.1	0.62	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000504.1	0.62	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000539.1	0.61	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000528.1	0.61	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000500.1	0.61	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000502.1	0.59	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000521.1	0.59	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000561.1	0.58	RiPP	thermophilin 1277	Streptococcus thermophilus
BGC0000498.1	0.58	RiPP	bovicin HJ50	Streptococcus equinus

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg1_1110 - Putative Class II

ctg1_1113 leader / core peptide: MSNTSIDVDSIVGDDFSDLSPEDMALLTG - RGNDVAPQDhaLDhaIAVDhaVDVDhbVDhaVAMDhaVADhaYFHVGGDhbCKKH
ctg1_1114 leader / core peptide: MPIQHTVKTM - LAVMLDhaICLVCADhbNEQPLDhaADDhaGNIDhbLNVACDhaFMPWLCHH
allorf_1389020_1389193 leader / core peptide: LGADSDVFRWLGVDSDVFESDFVRFG - DhbHLPEFVRMDHQLRDAIRDhaDRLPRMRDhaCDCR
allorf_1386454_1386564 leader / core peptide: LKEHAPAFGA - DDhaRRCDhaWKRRREIERAAYYRAMDhbREP

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lanthipeptides

Core peptide predictions

ctg1_1113 - Class II

Cleavage pHMM score: -4.10

RODEO score: 0

Monoisotopic mass: 3872.0 Da

Molecular weight: 3874.4 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 3892.4 Da N = 1; 3910.4 Da N = 2; 3928.4 Da N = 3; 3946.5 Da N = 4; 3964.5 Da N = 5; 3982.5 Da N = 6; 4000.5 Da N = 7

ctg1_1114 - Class II

Cleavage pHMM score: -7.00

RODEO score: 0

Monoisotopic mass: 4193.0 Da

Molecular weight: 4195.9 Da

Number of bridges: 4

Alternative weights: (assuming N unmodified Ser/Thr residues); 4213.9 Da N = 1; 4232.0 Da N = 2

allorf_1389020_1389193 - Class II

Cleavage pHMM score: -6.50

RODEO score: 0

Monoisotopic mass: 3754.9 Da

Molecular weight: 3757.3 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 3775.3 Da N = 1

allorf_1386454_1386564 - Class II

Cleavage pHMM score: -5.10

RODEO score: 0

Monoisotopic mass: 3287.7 Da

Molecular weight: 3289.7 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 3307.7 Da N = 1; 3325.7 Da N = 2