GCF_001457875.1_Actinomyces_ihumii_genomic - 1 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CZPX01000005 (original name was: NZ_CZPX01000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS	1,232,301	1,278,033

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	NRPS	1,232,301	1,278,033

No secondary metabolite regions were found in these records:: NZ_CZPX01000002 (original name was: NZ_CZPX01000002.1); NZ_CZPX01000003 (original name was: NZ_CZPX01000003.1); NZ_CZPX01000004 (original name was: NZ_CZPX01000004.1)

Compact view

c00004_NZ_CZPX.. - Region 1 - NRPS

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Location: 1,232,301 - 1,278,033 nt. (total: 45,733 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001831.1	0.23	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000373.1	0.21	NRP	holomycin	Streptomyces clavuligerus ATCC 27064
BGC0001636.1	0.21	NRP	KK-1	Curvularia clavata
BGC0000427.1	0.20	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001220.1	0.20	NRP	aculeacin A	Aspergillus japonicus
BGC0001211.1	0.20	NRP	albachelin	Amycolatopsis alba DSM 44262
BGC0001479.1	0.20	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001132.1	0.20	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001128.1	0.20	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.20	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001831.1	0.57	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000373.1	0.54	NRP	holomycin	Streptomyces clavuligerus ATCC 27064
BGC0001636.1	0.53	NRP	KK-1	Curvularia clavata
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001220.1	0.53	NRP	aculeacin A	Aspergillus japonicus
BGC0001211.1	0.53	NRP	albachelin	Amycolatopsis alba DSM 44262
BGC0001479.1	0.52	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001132.1	0.52	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001128.1	0.52	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.52	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters

No matches found.

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 1232300 - 1278033:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_1088

CAL_domain (30..449): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 51.1
AHBA: 7.3
shikimic_acid: 0.0
NH2: 0.0
Acetyl-CoA: 0.0

ctg4_1089

Search NORINE for peptide: strict or relaxed

AMP-binding (518..895): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNMSlIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)