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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LR134439.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | T3PKS | 137,760 | 178,905 |
Region 2 | cyclic-lactone-autoinducer | 976,992 | 999,860 |

NZ_LR134439.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 137,760 - 178,905 nt. (total: 41,146 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000286.1 |  | 0.22 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0001864.1 |  | 0.19 | RiPP | listeriocytocin | Listeria monocytogenes SLCC2540
BGC0000938.1 |  | 0.19 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0000867.1 |  | 0.19 | Other | polyhydroxyalkanoic acids | Ectothiorhodospira shaposhnikovii
BGC0000866.1 |  | 0.18 | Other | polyhydroxyalkanoate | Burkholderia sp. DSM 9242
BGC0001859.1 |  | 0.18 | Other (Phosphonate) | fosfomycin | Pseudomonas syringae
BGC0000774.1 |  | 0.18 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001210.1 |  | 0.16 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000487.1 |  | 0.16 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0000205.1 |  | 0.16 | Polyketide | bryostatin | Candidatus Endobugula sertula

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000286.1 |  | 0.55 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0001864.1 |  | 0.52 | RiPP | listeriocytocin | Listeria monocytogenes SLCC2540
BGC0000938.1 |  | 0.51 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0000867.1 |  | 0.51 | Other | polyhydroxyalkanoic acids | Ectothiorhodospira shaposhnikovii
BGC0000866.1 |  | 0.50 | Other | polyhydroxyalkanoate | Burkholderia sp. DSM 9242
BGC0001859.1 |  | 0.49 | Other (Phosphonate) | fosfomycin | Pseudomonas syringae
BGC0000774.1 |  | 0.49 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001210.1 |  | 0.47 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0000487.1 |  | 0.47 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0000205.1 |  | 0.47 | Polyketide | bryostatin | Candidatus Endobugula sertula

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_LR134439.1 - Region 2 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 976,992 - 999,860 nt. (total: 22,869 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001895.1 |  | 0.06 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0000813.1 |  | 0.06 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0000382.1 |  | 0.05 | NRP | lipstatin | Streptomyces toxytricini
BGC0001580.1 |  | 0.04 | Polyketide | ebelactone | Kitasatospora aburaviensis
BGC0000814.1 |  | 0.04 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0001447.1 |  | 0.03 | Polyketide | primycin | Saccharomonospora azurea SZMC 14600
BGC0000020.1 |  | 0.03 | Polyketide | maytansine, ansamitocin P-3 | Actinosynnema pretiosum subsp. auranticum
BGC0001511.1 |  | 0.03 | Polyketide | ansamitocin P-3 | Actinosynnema pretiosum subsp. pretiosum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001895.1 |  | 0.26 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0000813.1 |  | 0.25 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0000382.1 |  | 0.21 | NRP | lipstatin | Streptomyces toxytricini
BGC0001580.1 |  | 0.20 | Polyketide | ebelactone | Kitasatospora aburaviensis
BGC0000814.1 |  | 0.17 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0001447.1 |  | 0.16 | Polyketide | primycin | Saccharomonospora azurea SZMC 14600
BGC0000020.1 |  | 0.15 | Polyketide | maytansine, ansamitocin P-3 | Actinosynnema pretiosum subsp. auranticum
BGC0001511.1 |  | 0.15 | Polyketide | ansamitocin P-3 | Actinosynnema pretiosum subsp. pretiosum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names