GCF_000027145.1_ASM2714v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NC_013891.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	cyclic-lactone-autoinducer	26,434	47,193
Region 2	RRE-containing	1,150,896	1,171,150
Region 3	T3PKS	1,341,386	1,382,552	burkholderic acid	NRP + Polyketide:Modular type I	6%

NC_013891.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 26,434 - 47,193 nt. (total: 20,760 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000571.1	0.15	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii
BGC0000734.1	0.14	Saccharide	capsular polysaccharide	Pasteurella multocida
BGC0000774.1	0.13	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000735.1	0.13	Saccharide	capsular polysaccharide	Pasteurella multocida
BGC0000703.1	0.13	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000540.1	0.13	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000736.1	0.13	Saccharide	capsular polysaccharide	Mannheimia haemolytica
BGC0001928.1	0.13	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001607.1	0.13	Other	gilvusmycin	Streptomyces sp. NRRL B-1347

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000571.1	0.45	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000294.1	0.44	NRP	acinetobactin	Acinetobacter baumannii
BGC0000734.1	0.43	Saccharide	capsular polysaccharide	Pasteurella multocida
BGC0000774.1	0.42	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000735.1	0.42	Saccharide	capsular polysaccharide	Pasteurella multocida
BGC0000703.1	0.42	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000540.1	0.42	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000736.1	0.42	Saccharide	capsular polysaccharide	Mannheimia haemolytica
BGC0001928.1	0.42	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001607.1	0.42	Other	gilvusmycin	Streptomyces sp. NRRL B-1347

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_013891.1 - Region 2 - RRE-containing

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Location: 1,150,896 - 1,171,150 nt. (total: 20,255 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000719.1	0.20	Saccharide	tobramycin	Streptoalloteichus hindustanus
BGC0000720.1	0.16	Saccharide	tobramycin	Streptoalloteichus tenebrarius
BGC0001514.1	0.16	Other	aristeromycin	Streptomyces citricolor
BGC0000888.1	0.16	Other	bacilysin	Bacillus sp. CS93
BGC0000698.1	0.16	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0000509.1	0.15	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0001928.1	0.14	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000795.1	0.14	Saccharide	S-layer glycan	Aneurinibacillus thermoaerophilus
BGC0001774.1	0.14	Other	spicamycin	Streptomyces fimbriatus
BGC0001605.1	0.14	Terpene	gibberellin	Sinorhizobium fredii NGR234

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000719.1	0.53	Saccharide	tobramycin	Streptoalloteichus hindustanus
BGC0000720.1	0.47	Saccharide	tobramycin	Streptoalloteichus tenebrarius
BGC0001514.1	0.47	Other	aristeromycin	Streptomyces citricolor
BGC0000888.1	0.47	Other	bacilysin	Bacillus sp. CS93
BGC0000698.1	0.46	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0000509.1	0.46	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0001928.1	0.44	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000795.1	0.44	Saccharide	S-layer glycan	Aneurinibacillus thermoaerophilus
BGC0001774.1	0.43	Other	spicamycin	Streptomyces fimbriatus
BGC0001605.1	0.43	Terpene	gibberellin	Sinorhizobium fredii NGR234

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NC_013891.1 - Region 3 - T3PKS

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Location: 1,341,386 - 1,382,552 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.19	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000866.1	0.19	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0000867.1	0.18	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0000938.1	0.18	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0001909.1	0.17	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001660.1	0.16	RiPP	mathermycin	Marinactinospora thermotolerans
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000523.1	0.16	RiPP	lactocin S	Lactobacillus sakei
BGC0000626.1	0.16	RiPP	thuricin	Bacillus thuringiensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.51	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000866.1	0.50	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0000867.1	0.49	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0000938.1	0.49	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0001909.1	0.48	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001660.1	0.47	RiPP	mathermycin	Marinactinospora thermotolerans
BGC0000504.1	0.47	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000487.1	0.47	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000523.1	0.47	RiPP	lactocin S	Lactobacillus sakei
BGC0000626.1	0.46	RiPP	thuricin	Bacillus thuringiensis

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names