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Overview
34.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JHXA01000037 (original name was: NZ_JHXA01000037.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 34.1 | ranthipeptide | 1 | 13,610 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 34.1 | ranthipeptide | 1 | 13,610 |

No secondary metabolite regions were found in these records:
  NZ_JHXA01000001 (original name was: NZ_JHXA01000001.1)
  NZ_KK211369.1
  NZ_KK211370.1
  NZ_JHXA01000006 (original name was: NZ_JHXA01000006.1)
  NZ_JHXA01000007 (original name was: NZ_JHXA01000007.1)
  NZ_JHXA01000008 (original name was: NZ_JHXA01000008.1)
  NZ_JHXA01000009 (original name was: NZ_JHXA01000009.1)
  NZ_JHXA01000010 (original name was: NZ_JHXA01000010.1)
  NZ_JHXA01000011 (original name was: NZ_JHXA01000011.1)
  NZ_JHXA01000012 (original name was: NZ_JHXA01000012.1)
  NZ_KK211371.1
  NZ_JHXA01000015 (original name was: NZ_JHXA01000015.1)
  NZ_JHXA01000016 (original name was: NZ_JHXA01000016.1)
  NZ_JHXA01000017 (original name was: NZ_JHXA01000017.1)
  NZ_JHXA01000018 (original name was: NZ_JHXA01000018.1)
  NZ_JHXA01000019 (original name was: NZ_JHXA01000019.1)
  NZ_JHXA01000020 (original name was: NZ_JHXA01000020.1)
  NZ_JHXA01000021 (original name was: NZ_JHXA01000021.1)
  NZ_JHXA01000022 (original name was: NZ_JHXA01000022.1)
  NZ_JHXA01000023 (original name was: NZ_JHXA01000023.1)
  NZ_JHXA01000024 (original name was: NZ_JHXA01000024.1)
  NZ_JHXA01000025 (original name was: NZ_JHXA01000025.1)
  NZ_JHXA01000026 (original name was: NZ_JHXA01000026.1)
  NZ_JHXA01000027 (original name was: NZ_JHXA01000027.1)
  NZ_JHXA01000028 (original name was: NZ_JHXA01000028.1)
  NZ_JHXA01000029 (original name was: NZ_JHXA01000029.1)
  NZ_JHXA01000030 (original name was: NZ_JHXA01000030.1)
  NZ_JHXA01000031 (original name was: NZ_JHXA01000031.1)
  NZ_JHXA01000032 (original name was: NZ_JHXA01000032.1)
  NZ_JHXA01000033 (original name was: NZ_JHXA01000033.1)
  NZ_JHXA01000034 (original name was: NZ_JHXA01000034.1)
  NZ_JHXA01000035 (original name was: NZ_JHXA01000035.1)
  NZ_JHXA01000036 (original name was: NZ_JHXA01000036.1)
  NZ_JHXA01000038 (original name was: NZ_JHXA01000038.1)
  NZ_JHXA01000039 (original name was: NZ_JHXA01000039.1)
  NZ_JHXA01000040 (original name was: NZ_JHXA01000040.1)
  NZ_JHXA01000041 (original name was: NZ_JHXA01000041.1)
  NZ_JHXA01000042 (original name was: NZ_JHXA01000042.1)
  NZ_JHXA01000043 (original name was: NZ_JHXA01000043.1)
  NZ_JHXA01000044 (original name was: NZ_JHXA01000044.1)

Compact view
c00034_NZ_JHXA.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 1 - 13,610 nt. (total: 13,610 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
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Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000548.1 |  | 0.17 | RiPP | salivaricin A | Streptococcus salivarius
BGC0000554.1 |  | 0.17 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000489.1 |  | 0.15 | RiPP | enterocin AS-48 | Enterococcus faecalis
BGC0001222.1 |  | 0.15 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.15 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001743.1 |  | 0.15 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0001639.1 |  | 0.15 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0000590.1 |  | 0.15 | RiPP | microcin N | Escherichia coli
BGC0000623.1 |  | 0.15 | RiPP | plantaricin W α, plantaricin W β | Lactobacillus plantarum
BGC0000601.1 |  | 0.14 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000548.1 |  | 0.48 | RiPP | salivaricin A | Streptococcus salivarius
BGC0000554.1 |  | 0.47 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000489.1 |  | 0.46 | RiPP | enterocin AS-48 | Enterococcus faecalis
BGC0001222.1 |  | 0.46 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.45 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001743.1 |  | 0.45 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0001639.1 |  | 0.45 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0000590.1 |  | 0.45 | RiPP | microcin N | Escherichia coli
BGC0000623.1 |  | 0.45 | RiPP | plantaricin W α, plantaricin W β | Lactobacillus plantarum
BGC0000601.1 |  | 0.44 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
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No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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