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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CTEJ01000001 (original name was: NZ_CTEJ01000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 268,563 | 295,005 |
Region 1.2 | RRE-containing | 1,117,204 | 1,137,473 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 268,563 | 295,005 |
Region 1.2 | RRE-containing | 1,117,204 | 1,137,473 |

No secondary metabolite regions were found in these records:
  NZ_CTEJ01000002 (original name was: NZ_CTEJ01000002.1)

Compact view
c00001_NZ_CTEJ.. - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 268,563 - 295,005 nt. (total: 26,443 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000904.1 |  | 0.21 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000466.1 |  | 0.14 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0001996.1 |  | 0.13 | Other | oryzine A, oryzine B | Aspergillus oryzae RIB40
BGC0001075.1 |  | 0.11 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0001423.1 |  | 0.08 | NRP, Polyketide | myxochromide C | Myxococcus hansupus
BGC0001421.1 |  | 0.08 | NRP, Polyketide | myxochromide B | Myxococcus sp.
BGC0001428.1 |  | 0.08 | NRP, Polyketide | myxochromide A | Myxococcus xanthus
BGC0001425.1 |  | 0.08 | NRP, Polyketide | myxochromide A | Myxococcus xanthus DK 1622
BGC0001426.1 |  | 0.08 | NRP, Polyketide | myxochromide A | Myxococcus xanthus
BGC0001427.1 |  | 0.08 | NRP, Polyketide | myxochromide A | Myxococcus xanthus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000904.1 |  | 0.54 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000466.1 |  | 0.43 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0001996.1 |  | 0.42 | Other | oryzine A, oryzine B | Aspergillus oryzae RIB40
BGC0001075.1 |  | 0.37 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0001423.1 |  | 0.32 | NRP, Polyketide | myxochromide C | Myxococcus hansupus
BGC0001421.1 |  | 0.32 | NRP, Polyketide | myxochromide B | Myxococcus sp.
BGC0001428.1 |  | 0.32 | NRP, Polyketide | myxochromide A | Myxococcus xanthus
BGC0001425.1 |  | 0.32 | NRP, Polyketide | myxochromide A | Myxococcus xanthus DK 1622
BGC0001426.1 |  | 0.32 | NRP, Polyketide | myxochromide A | Myxococcus xanthus
BGC0001427.1 |  | 0.32 | NRP, Polyketide | myxochromide A | Myxococcus xanthus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_CTEJ.. - Region 2 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,117,204 - 1,137,473 nt. (total: 20,270 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001551.1 |  | 0.23 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001411.1 |  | 0.22 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0001779.1 |  | 0.20 | RiPP | siamycin | Streptomyces nodosus
BGC0000728.1 |  | 0.19 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae subsp. ozaenae
BGC0000729.1 |  | 0.19 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0001589.1 |  | 0.19 | Saccharide | exopolysaccharides | Burkholderia cenocepacia J2315
BGC0001588.1 |  | 0.19 | Saccharide | exopolysaccharides | Burkholderia pseudomallei 1026b
BGC0000880.1 |  | 0.18 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0000787.1 |  | 0.18 | Saccharide | O-antigen | Escherichia coli
BGC0000788.1 |  | 0.17 | Saccharide | O-antigen | Salmonella enterica subsp. salamae serovar Greenside

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001551.1 |  | 0.56 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001411.1 |  | 0.55 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0001779.1 |  | 0.52 | RiPP | siamycin | Streptomyces nodosus
BGC0000728.1 |  | 0.51 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae subsp. ozaenae
BGC0000729.1 |  | 0.51 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0001589.1 |  | 0.51 | Saccharide | exopolysaccharides | Burkholderia cenocepacia J2315
BGC0001588.1 |  | 0.50 | Saccharide | exopolysaccharides | Burkholderia pseudomallei 1026b
BGC0000880.1 |  | 0.50 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0000787.1 |  | 0.49 | Saccharide | O-antigen | Escherichia coli
BGC0000788.1 |  | 0.48 | Saccharide | O-antigen | Salmonella enterica subsp. salamae serovar Greenside

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names