Select genomic region:
Overview
9.1
9.2
9.3

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LN851186.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 9.1 | terpene | 1,312,181 | 1,333,944 |
Region 9.2 | betalactone | 1,861,760 | 1,885,930 | fengycin | NRP | 46%
Region 9.3 | LAP,RiPP-like | 1,904,181 | 1,927,717 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 9.1 | terpene | 1,312,181 | 1,333,944 |
Region 9.2 | betalactone | 1,861,760 | 1,885,930 | fengycin | NRP | 46%
Region 9.3 | LAP,RiPP-like | 1,904,181 | 1,927,717 |

No secondary metabolite regions were found in these records:
  NZ_LN851178.1
  NZ_LN851179.1
  NZ_LN851180.1
  NZ_LN851181.1
  NZ_LN851182.1
  NZ_LN851183.1
  NZ_LN851184.1
  NZ_LN851185.1

Compact view
NZ_LN851186.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,312,181 - 1,333,944 nt. (total: 21,764 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001206.1 |  | 0.14 | Other | indolmycin | Streptomyces griseus subsp. griseus
BGC0000670.1 |  | 0.13 | Terpene | thalianol, thaliandiol | Arabidopsis thaliana
BGC0001313.1 |  | 0.13 | Terpene | arabidiol-baruol | Arabidopsis thaliana
BGC0000663.1 |  | 0.08 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0001546.1 |  | 0.08 | Alkaloid | chuangxinmycin | Actinoplanes tsinanensis
BGC0001485.1 |  | 0.07 | Other | 3-demethylchuangxinmycin | Actinoplanes tsinanensis
BGC0001946.1 |  | 0.03 | NRP, Polyketide | lagriamide | Burkholderia gladioli
BGC0001646.1 |  | 0.03 | Polyketide | lagriamide | Burkholderia gladioli

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001206.1 |  | 0.44 | Other | indolmycin | Streptomyces griseus subsp. griseus
BGC0000670.1 |  | 0.41 | Terpene | thalianol, thaliandiol | Arabidopsis thaliana
BGC0001313.1 |  | 0.41 | Terpene | arabidiol-baruol | Arabidopsis thaliana
BGC0000663.1 |  | 0.30 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0001546.1 |  | 0.30 | Alkaloid | chuangxinmycin | Actinoplanes tsinanensis
BGC0001485.1 |  | 0.28 | Other | 3-demethylchuangxinmycin | Actinoplanes tsinanensis
BGC0001946.1 |  | 0.16 | NRP, Polyketide | lagriamide | Burkholderia gladioli
BGC0001646.1 |  | 0.16 | Polyketide | lagriamide | Burkholderia gladioli

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_LN851186.1 - Region 2 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,861,760 - 1,885,930 nt. (total: 24,171 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001778.1 |  | 0.27 | Other | showdomycin | Streptomyces showdoensis
BGC0000234.1 |  | 0.21 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001465.1 |  | 0.20 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000891.1 |  | 0.20 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000890.1 |  | 0.20 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0001897.1 |  | 0.18 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000260.1 |  | 0.17 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0000703.1 |  | 0.17 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001343.1 |  | 0.16 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0000706.1 |  | 0.16 | Saccharide | kanamycin | Streptomyces kanamyceticus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001778.1 |  | 0.60 | Other | showdomycin | Streptomyces showdoensis
BGC0000234.1 |  | 0.54 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001465.1 |  | 0.53 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000891.1 |  | 0.53 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000890.1 |  | 0.52 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0001897.1 |  | 0.50 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000260.1 |  | 0.49 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0000703.1 |  | 0.49 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001343.1 |  | 0.46 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0000706.1 |  | 0.46 | Saccharide | kanamycin | Streptomyces kanamyceticus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_LN851186.1 - Region 3 - LAP,RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,904,181 - 1,927,717 nt. (total: 23,537 nt) Show pHMM detection rules used
LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | LAP | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0000607.1 |  |  | 0.52 | RiPP | micrococcin P1 | Macrococcus caseolyticus
BGC0001146.1 |  |  | 0.39 | RiPP | cyclothiazomycin C | Streptomyces sp. NRRL WC-3908
BGC0000218.1 |  |  | 0.34 | Polyketide | doxorubicin | Streptomyces peucetius
BGC0001145.1 |  |  | 0.33 | RiPP | cyclothiazomycin b1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847
BGC0000217.1 |  |  | 0.33 | Polyketide | daunorubicin | Streptomyces sp.
BGC0000613.1 |  |  | 0.32 | RiPP | thiomuracin A | Nonomuraea sp. Bp3714-39
BGC0001860.1 |  |  | 0.32 | RiPP | thiomuracin | Thermobispora bispora DSM 43833
BGC0001783.1 |  |  | 0.31 | Other | streptonigrin | Streptomyces flocculus
BGC0000628.1 |  |  | 0.31 | RiPP | lactocillin | Lactobacillus paragasseri JV-V03
BGC0001120.1 |  |  | 0.31 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000607.1 |  | 0.59 | RiPP | micrococcin P1 | Macrococcus caseolyticus
BGC0001146.1 |  | 0.52 | RiPP | cyclothiazomycin C | Streptomyces sp. NRRL WC-3908
BGC0000218.1 |  | 0.51 | Polyketide | doxorubicin | Streptomyces peucetius
BGC0000217.1 |  | 0.51 | Polyketide | daunorubicin | Streptomyces sp.
BGC0000613.1 |  | 0.48 | RiPP | thiomuracin A | Nonomuraea sp. Bp3714-39
BGC0001860.1 |  | 0.48 | RiPP | thiomuracin | Thermobispora bispora DSM 43833
BGC0001145.1 |  | 0.48 | RiPP | cyclothiazomycin b1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847
BGC0000671.1 |  | 0.47 | Terpene | momilactone | Oryza sativa Japonica Group
BGC0001783.1 |  | 0.46 | Other | streptonigrin | Streptomyces flocculus
BGC0000628.1 |  | 0.46 | RiPP | lactocillin | Lactobacillus paragasseri JV-V03

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names