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Overview
1.1
1.2
2.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP030932.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | cyclic-lactone-autoinducer | 861,028 | 881,600 |
Region 1.2 | terpene | 984,654 | 1,005,538 |

NZ_CP030933.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | cyclic-lactone-autoinducer | 433,040 | 453,766 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | cyclic-lactone-autoinducer | 861,028 | 881,600 |
Region 1.2 | terpene | 984,654 | 1,005,538 |
Region 2.1 | cyclic-lactone-autoinducer | 433,040 | 453,766 |

No secondary metabolite regions were found in these records:
  NZ_CP030934.1
  NZ_CP030935.1

Compact view
NZ_CP030932.1 - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 861,028 - 881,600 nt. (total: 20,573 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.1 |  | 0.13 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0000486.1 |  | 0.09 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000494.1 |  | 0.09 | RiPP | uberolysin | Streptococcus uberis
BGC0001388.1 |  | 0.06 | RiPP | gassericin E | Lactobacillus gasseri

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.1 |  | 0.41 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0000486.1 |  | 0.33 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000494.1 |  | 0.32 | RiPP | uberolysin | Streptococcus uberis
BGC0001388.1 |  | 0.26 | RiPP | gassericin E | Lactobacillus gasseri

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP030932.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 984,654 - 1,005,538 nt. (total: 20,885 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.46 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.23 | Terpene | carotenoid | Myxococcus xanthus
BGC0000643.1 |  | 0.21 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000634.1 |  | 0.21 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000646.1 |  | 0.19 | Terpene | β-carotein | uncultured bacterium
BGC0000656.1 |  | 0.19 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000640.1 |  | 0.19 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000630.1 |  | 0.18 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000638.1 |  | 0.18 | Terpene | carotenoid | Pantoea ananatis
BGC0000642.1 |  | 0.18 | Terpene | carotenoid | Enterobacteriaceae bacterium DC413

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.76 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.56 | Terpene | carotenoid | Myxococcus xanthus
BGC0000643.1 |  | 0.54 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000634.1 |  | 0.54 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000646.1 |  | 0.51 | Terpene | β-carotein | uncultured bacterium
BGC0000656.1 |  | 0.51 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000640.1 |  | 0.50 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000630.1 |  | 0.50 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000638.1 |  | 0.50 | Terpene | carotenoid | Pantoea ananatis
BGC0000642.1 |  | 0.50 | Terpene | carotenoid | Enterobacteriaceae bacterium DC413

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP030933.1 - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 433,040 - 453,766 nt. (total: 20,727 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.1 |  | 0.18 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0001484.1 |  | 0.14 | Other | 2'-chloropentostatin, 2'-amino-2'-deoxyadenosine | Actinomadura sp. ATCC 39365
BGC0000776.1 |  | 0.13 | Saccharide | lipopolysaccharide | Escherichia coli
BGC0000793.1 |  | 0.13 | Saccharide | lipopolysaccharide oligosaccharide | Salmonella enterica subsp. arizonae
BGC0001985.1 |  | 0.13 | Other | pyrazomycin | Streptomyces candidus
BGC0000804.1 |  | 0.13 | Saccharide | acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03 | Streptomyces coelicoflavus ZG0656
BGC0000540.1 |  | 0.13 | RiPP | paenibacillin | Paenibacillus polymyxa OSY-DF
BGC0000691.1 |  | 0.06 | Saccharide | acarbose | Actinoplanes sp. SE50/110

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.1 |  | 0.49 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0001484.1 |  | 0.43 | Other | 2'-chloropentostatin, 2'-amino-2'-deoxyadenosine | Actinomadura sp. ATCC 39365
BGC0000776.1 |  | 0.42 | Saccharide | lipopolysaccharide | Escherichia coli
BGC0000793.1 |  | 0.42 | Saccharide | lipopolysaccharide oligosaccharide | Salmonella enterica subsp. arizonae
BGC0001985.1 |  | 0.42 | Other | pyrazomycin | Streptomyces candidus
BGC0000804.1 |  | 0.41 | Saccharide | acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03 | Streptomyces coelicoflavus ZG0656
BGC0000540.1 |  | 0.41 | RiPP | paenibacillin | Paenibacillus polymyxa OSY-DF
BGC0000691.1 |  | 0.25 | Saccharide | acarbose | Actinoplanes sp. SE50/110

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names