Select genomic region:
Overview
1.1
2.1
2.2
12.1
13.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_AUGQ01000001 (original name was: NZ_AUGQ01000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | NRPS | 334,067 | 388,726 | fuscachelin A / fuscachelin B / fuscachelin C | NRP | 66%

NZ_AUGQ01000002 (original name was: NZ_AUGQ01000002.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | NAPAA | 18,481 | 52,164 | formicamycins A-M | Polyketide | 9%
Region 2.2 | ectoine | 274,142 | 284,531 | ectoine | Other | 75%

NZ_AUGQ01000013 (original name was: NZ_AUGQ01000013.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | terpene | 9,964 | 30,848 | carotenoid | Terpene | 28%

NZ_AUGQ01000014 (original name was: NZ_AUGQ01000014.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | betalactone | 1 | 20,399 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | NRPS | 334,067 | 388,726 | fuscachelin A / fuscachelin B / fuscachelin C | NRP | 66%
Region 2.1 | NAPAA | 18,481 | 52,164 | formicamycins A-M | Polyketide | 9%
Region 2.2 | ectoine | 274,142 | 284,531 | ectoine | Other | 75%
Region 12.1 | terpene | 9,964 | 30,848 | carotenoid | Terpene | 28%
Region 13.1 | betalactone | 1 | 20,399 |

No secondary metabolite regions were found in these records:
  NZ_KE383914.1
  NZ_AUGQ01000005 (original name was: NZ_AUGQ01000005.1)
  NZ_AUGQ01000006 (original name was: NZ_AUGQ01000006.1)
  NZ_AUGQ01000007 (original name was: NZ_AUGQ01000007.1)
  NZ_AUGQ01000008 (original name was: NZ_AUGQ01000008.1)
  NZ_AUGQ01000009 (original name was: NZ_AUGQ01000009.1)
  NZ_AUGQ01000010 (original name was: NZ_AUGQ01000010.1)
  NZ_AUGQ01000011 (original name was: NZ_AUGQ01000011.1)
  NZ_AUGQ01000012 (original name was: NZ_AUGQ01000012.1)
  NZ_AUGQ01000015 (original name was: NZ_AUGQ01000015.1)
  NZ_AUGQ01000016 (original name was: NZ_AUGQ01000016.1)
  NZ_AUGQ01000017 (original name was: NZ_AUGQ01000017.1)
  NZ_AUGQ01000018 (original name was: NZ_AUGQ01000018.1)
  NZ_AUGQ01000019 (original name was: NZ_AUGQ01000019.1)
  NZ_AUGQ01000020 (original name was: NZ_AUGQ01000020.1)
  NZ_AUGQ01000021 (original name was: NZ_AUGQ01000021.1)
  NZ_AUGQ01000022 (original name was: NZ_AUGQ01000022.1)
  NZ_AUGQ01000023 (original name was: NZ_AUGQ01000023.1)
  NZ_AUGQ01000024 (original name was: NZ_AUGQ01000024.1)
  NZ_AUGQ01000025 (original name was: NZ_AUGQ01000025.1)
  NZ_AUGQ01000026 (original name was: NZ_AUGQ01000026.1)
  NZ_AUGQ01000027 (original name was: NZ_AUGQ01000027.1)
  NZ_AUGQ01000028 (original name was: NZ_AUGQ01000028.1)
  NZ_AUGQ01000029 (original name was: NZ_AUGQ01000029.1)
  NZ_AUGQ01000030 (original name was: NZ_AUGQ01000030.1)
  NZ_AUGQ01000031 (original name was: NZ_AUGQ01000031.1)
  NZ_AUGQ01000032 (original name was: NZ_AUGQ01000032.1)
  NZ_AUGQ01000033 (original name was: NZ_AUGQ01000033.1)
  NZ_AUGQ01000034 (original name was: NZ_AUGQ01000034.1)
  NZ_AUGQ01000035 (original name was: NZ_AUGQ01000035.1)
  NZ_AUGQ01000036 (original name was: NZ_AUGQ01000036.1)
  NZ_AUGQ01000037 (original name was: NZ_AUGQ01000037.1)
  NZ_AUGQ01000038 (original name was: NZ_AUGQ01000038.1)
  NZ_AUGQ01000039 (original name was: NZ_AUGQ01000039.1)
  NZ_AUGQ01000040 (original name was: NZ_AUGQ01000040.1)
  NZ_AUGQ01000041 (original name was: NZ_AUGQ01000041.1)
  NZ_AUGQ01000042 (original name was: NZ_AUGQ01000042.1)
  NZ_AUGQ01000043 (original name was: NZ_AUGQ01000043.1)
  NZ_AUGQ01000044 (original name was: NZ_AUGQ01000044.1)
  NZ_AUGQ01000045 (original name was: NZ_AUGQ01000045.1)
  NZ_AUGQ01000046 (original name was: NZ_AUGQ01000046.1)
  NZ_AUGQ01000047 (original name was: NZ_AUGQ01000047.1)
  NZ_AUGQ01000048 (original name was: NZ_AUGQ01000048.1)
  NZ_AUGQ01000049 (original name was: NZ_AUGQ01000049.1)
  NZ_AUGQ01000050 (original name was: NZ_AUGQ01000050.1)
  NZ_AUGQ01000051 (original name was: NZ_AUGQ01000051.1)
  NZ_AUGQ01000052 (original name was: NZ_AUGQ01000052.1)
  NZ_AUGQ01000053 (original name was: NZ_AUGQ01000053.1)
  NZ_AUGQ01000054 (original name was: NZ_AUGQ01000054.1)
  NZ_AUGQ01000055 (original name was: NZ_AUGQ01000055.1)
  NZ_AUGQ01000056 (original name was: NZ_AUGQ01000056.1)
  NZ_AUGQ01000057 (original name was: NZ_AUGQ01000057.1)
  NZ_AUGQ01000058 (original name was: NZ_AUGQ01000058.1)
  NZ_AUGQ01000059 (original name was: NZ_AUGQ01000059.1)
  NZ_AUGQ01000060 (original name was: NZ_AUGQ01000060.1)
  NZ_AUGQ01000061 (original name was: NZ_AUGQ01000061.1)
  NZ_AUGQ01000062 (original name was: NZ_AUGQ01000062.1)
  NZ_AUGQ01000063 (original name was: NZ_AUGQ01000063.1)
  NZ_AUGQ01000064 (original name was: NZ_AUGQ01000064.1)
  NZ_AUGQ01000065 (original name was: NZ_AUGQ01000065.1)
  NZ_AUGQ01000066 (original name was: NZ_AUGQ01000066.1)
  NZ_AUGQ01000067 (original name was: NZ_AUGQ01000067.1)
  NZ_AUGQ01000068 (original name was: NZ_AUGQ01000068.1)
  NZ_AUGQ01000069 (original name was: NZ_AUGQ01000069.1)
  NZ_AUGQ01000070 (original name was: NZ_AUGQ01000070.1)
  NZ_AUGQ01000071 (original name was: NZ_AUGQ01000071.1)
  NZ_AUGQ01000072 (original name was: NZ_AUGQ01000072.1)
  NZ_AUGQ01000073 (original name was: NZ_AUGQ01000073.1)
  NZ_AUGQ01000074 (original name was: NZ_AUGQ01000074.1)
  NZ_AUGQ01000075 (original name was: NZ_AUGQ01000075.1)

Compact view
c00001_NZ_AUGQ.. - Region 1 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 334,067 - 388,726 nt. (total: 54,660 nt) Show pHMM detection rules used
NRPS: cds(Condensation and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NRPS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001050.1 |  | 0.34 | NRP, Polyketide | thalassospiramide A | Tistrella bauzanensis
BGC0000457.1 |  | 0.30 | NRP | vicibactin | Rhizobium etli CFN 42
BGC0000901.1 |  | 0.29 | Other | ferrichrome | Aspergillus niger
BGC0000438.1 |  | 0.27 | NRP | syringopeptin 25A | Pseudomonas syringae pv. syringae
BGC0000313.1 |  | 0.27 | NRP | beauvericin | Beauveria bassiana
BGC0000465.1 |  | 0.26 | NRP | xenortide A, xenortide B, xenortide C, xenortide D | Xenorhabdus nematophila ATCC 19061
BGC0000389.1 |  | 0.26 | NRP | massetolide A | Pseudomonas fluorescens SS101
BGC0000426.1 |  | 0.26 | NRP | sevadicin | Paenibacillus larvae
BGC0000342.1 |  | 0.26 | NRP | enniatin | Fusarium equiseti
BGC0001399.1 |  | 0.26 | NRP | fellutamide B | Aspergillus nidulans FGSC A4

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001050.1 |  | 0.67 | NRP, Polyketide | thalassospiramide A | Tistrella bauzanensis
BGC0000457.1 |  | 0.64 | NRP | vicibactin | Rhizobium etli CFN 42
BGC0000901.1 |  | 0.62 | Other | ferrichrome | Aspergillus niger
BGC0000438.1 |  | 0.60 | NRP | syringopeptin 25A | Pseudomonas syringae pv. syringae
BGC0000313.1 |  | 0.60 | NRP | beauvericin | Beauveria bassiana
BGC0000465.1 |  | 0.60 | NRP | xenortide A, xenortide B, xenortide C, xenortide D | Xenorhabdus nematophila ATCC 19061
BGC0000389.1 |  | 0.60 | NRP | massetolide A | Pseudomonas fluorescens SS101
BGC0000426.1 |  | 0.60 | NRP | sevadicin | Paenibacillus larvae
BGC0000342.1 |  | 0.59 | NRP | enniatin | Fusarium equiseti
BGC0001399.1 |  | 0.59 | NRP | fellutamide B | Aspergillus nidulans FGSC A4

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 334066 - 388726:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (ala-b) + (X) + (X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg1_348: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (106..539): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    NOTE: outside applicability domain
    Predicted physicochemical class:
      N/A
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      m-WgtSmIcK
    Nearest Stachelhaus code:
      ser
    Stachelhaus code match:
      40% (weak)
ctg1_349: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (453..843): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    NOTE: outside applicability domain
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DMyiAGLmWK
    Nearest Stachelhaus code:
      thr
    Stachelhaus code match:
      70% (weak)
ctg1_350: ala-b
  Search NORINE for peptide: strict or relaxed
  AMP-binding (1069..1441): ala-b
  NRPSPredictor2: ala-b
  SVM prediction details:
    NOTE: outside applicability domain
    Predicted physicochemical class:
      hydrophilic
    Large clusters prediction:
      phe, trp, phg, tyr, bht
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      IDTtvSSGDK
    Nearest Stachelhaus code:
      ala-b
    Stachelhaus code match:
      80% (moderate)
ctg1_351: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (458..852): X
  NRPSPredictor2: ser, thr, dhpg, hpg
  SVM prediction details:
    Predicted physicochemical class:
      N/A
    Large clusters prediction:
      ser, thr, dhpg, hpg
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAWegGfVDK
    Nearest Stachelhaus code:
      glu
    Stachelhaus code match:
      70% (weak)
ctg1_352: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (549..940): X
  NRPSPredictor2: hydrophilic
  SVM prediction details:
    Predicted physicochemical class:
      hydrophilic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DLqHmgLIhK
    Nearest Stachelhaus code:
      ser
    Stachelhaus code match:
      60% (weak)
ctg1_354: dhb
  Search NORINE for peptide: strict or relaxed
  AMP-binding (39..437): dhb
  NRPSPredictor2: dhb
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aromatic
    Large clusters prediction:
      dhb, sal
    Small clusters prediction:
      dhb, sal
    Single AA prediction:
      dhb
  Stachelhaus prediction details:
    Stachelhaus sequence:
      TMPSQGVVNK
    Nearest Stachelhaus code:
      dhb
    Stachelhaus code match:
      100% (strong)

c00002_NZ_AUGQ.. - Region 1 - NAPAA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 18,481 - 52,164 nt. (total: 33,684 nt) Show pHMM detection rules used
NAPAA: (AMP-binding and PP-binding and TIGR02353)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NAPAA | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001591.1 |  | 0.23 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.23 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001441.1 |  | 0.22 | Other | belactosin A, belactosin C | Streptomyces sp.
BGC0000375.1 |  | 0.22 | NRP | indigoidine | Streptomyces chromofuscus
BGC0000343.1 |  | 0.22 | NRP | enterobactin | Pseudomonas sp. J465
BGC0001343.1 |  | 0.21 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0000427.1 |  | 0.21 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0000410.1 |  | 0.21 | NRP | pseudomonine | Pseudomonas fluorescens
BGC0001399.1 |  | 0.21 | NRP | fellutamide B | Aspergillus nidulans FGSC A4
BGC0000823.1 |  | 0.19 | Alkaloid | rebeccamycin | Lechevalieria aerocolonigenes

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001591.1 |  | 0.56 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.56 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001441.1 |  | 0.55 | Other | belactosin A, belactosin C | Streptomyces sp.
BGC0000375.1 |  | 0.55 | NRP | indigoidine | Streptomyces chromofuscus
BGC0000343.1 |  | 0.55 | NRP | enterobactin | Pseudomonas sp. J465
BGC0001343.1 |  | 0.54 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0000427.1 |  | 0.53 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0000410.1 |  | 0.53 | NRP | pseudomonine | Pseudomonas fluorescens
BGC0001399.1 |  | 0.53 | NRP | fellutamide B | Aspergillus nidulans FGSC A4
BGC0000823.1 |  | 0.52 | Alkaloid | rebeccamycin | Lechevalieria aerocolonigenes

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 18480 - 52164:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg2_34: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (35..424): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    Predicted physicochemical class:
      hydrophilic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      gly, ala
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAESIGtVvK
    Nearest Stachelhaus code:
      lys
    Stachelhaus code match:
      80% (moderate)

c00002_NZ_AUGQ.. - Region 2 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 274,142 - 284,531 nt. (total: 10,390 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.43 | Other | ectoine | Streptomyces anulatus
BGC0000856.1 |  | 0.40 | Other | ectoine | Methylophaga thalassica
BGC0000852.1 |  | 0.38 | Other | ectoine | Sporosarcina pasteurii
BGC0000859.1 |  | 0.33 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000855.1 |  | 0.33 | Other | ectoine | Methylomicrobium kenyense
BGC0000858.1 |  | 0.32 | Other | ectoine | Methylobacter marinus
BGC0000860.1 |  | 0.26 | Other | ectoine | Methylarcula marina
BGC0000857.1 |  | 0.26 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.25 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000774.1 |  | 0.16 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.74 | Other | ectoine | Streptomyces anulatus
BGC0000856.1 |  | 0.72 | Other | ectoine | Methylophaga thalassica
BGC0000852.1 |  | 0.70 | Other | ectoine | Sporosarcina pasteurii
BGC0000859.1 |  | 0.66 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000855.1 |  | 0.66 | Other | ectoine | Methylomicrobium kenyense
BGC0000858.1 |  | 0.66 | Other | ectoine | Methylobacter marinus
BGC0000860.1 |  | 0.60 | Other | ectoine | Methylarcula marina
BGC0000857.1 |  | 0.60 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.58 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000774.1 |  | 0.47 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00012_NZ_AUGQ.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 9,964 - 30,848 nt. (total: 20,885 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.29 | Terpene | carotenoid | Myxococcus xanthus
BGC0000650.1 |  | 0.25 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000637.1 |  | 0.21 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000644.1 |  | 0.21 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000656.1 |  | 0.18 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0001456.1 |  | 0.17 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000207.1 |  | 0.16 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001295.1 |  | 0.14 | Other | cremeomycin | Streptomyces cremeus
BGC0001374.1 |  | 0.14 | Other | thienodolin | Streptomyces albogriseolus
BGC0000812.1 |  | 0.13 | Alkaloid | huperzine A | Shiraia sp. slf14

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.62 | Terpene | carotenoid | Myxococcus xanthus
BGC0000650.1 |  | 0.59 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000637.1 |  | 0.54 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000644.1 |  | 0.53 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000656.1 |  | 0.50 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0001456.1 |  | 0.48 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000207.1 |  | 0.46 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001295.1 |  | 0.44 | Other | cremeomycin | Streptomyces cremeus
BGC0001374.1 |  | 0.43 | Other | thienodolin | Streptomyces albogriseolus
BGC0000812.1 |  | 0.42 | Alkaloid | huperzine A | Shiraia sp. slf14

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00013_NZ_AUGQ.. - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 20,399 nt. (total: 20,399 nt) Show pHMM detection rules used
Region on contig edge.
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.27 | Other | ectoine | Streptomyces anulatus
BGC0000855.1 |  | 0.27 | Other | ectoine | Methylomicrobium kenyense
BGC0000858.1 |  | 0.27 | Other | ectoine | Methylobacter marinus
BGC0000859.1 |  | 0.27 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000852.1 |  | 0.26 | Other | ectoine | Sporosarcina pasteurii
BGC0000856.1 |  | 0.26 | Other | ectoine | Methylophaga thalassica
BGC0000234.1 |  | 0.21 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000857.1 |  | 0.21 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.21 | Other | ectoine | Methylarcula marina
BGC0000854.1 |  | 0.20 | Other | ectoine | Methylomicrobium alcaliphilum 20Z

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.61 | Other | ectoine | Streptomyces anulatus
BGC0000855.1 |  | 0.60 | Other | ectoine | Methylomicrobium kenyense
BGC0000858.1 |  | 0.60 | Other | ectoine | Methylobacter marinus
BGC0000859.1 |  | 0.60 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000852.1 |  | 0.60 | Other | ectoine | Sporosarcina pasteurii
BGC0000856.1 |  | 0.60 | Other | ectoine | Methylophaga thalassica
BGC0000234.1 |  | 0.53 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000857.1 |  | 0.53 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.53 | Other | ectoine | Methylarcula marina
BGC0000854.1 |  | 0.53 | Other | ectoine | Methylomicrobium alcaliphilum 20Z

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names