Select genomic region:
Overview
12.1
15.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_PUXG01000019 (original name was: NZ_PUXG01000019.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | T3PKS | 11,503 | 52,660 |

NZ_PUXG01000030 (original name was: NZ_PUXG01000030.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 15.1 | arylpolyene | 40,534 | 69,047 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | T3PKS | 11,503 | 52,660 |
Region 15.1 | arylpolyene | 40,534 | 69,047 |

No secondary metabolite regions were found in these records:
  NZ_PUXG01000011 (original name was: NZ_PUXG01000011.1)
  NZ_PUXG01000018 (original name was: NZ_PUXG01000018.1)
  NZ_PUXG01000014 (original name was: NZ_PUXG01000014.1)
  NZ_PUXG01000020 (original name was: NZ_PUXG01000020.1)
  NZ_PUXG01000022 (original name was: NZ_PUXG01000022.1)
  NZ_PUXG01000024 (original name was: NZ_PUXG01000024.1)
  NZ_PUXG01000003 (original name was: NZ_PUXG01000003.1)
  NZ_PUXG01000037 (original name was: NZ_PUXG01000037.1)
  NZ_PUXG01000025 (original name was: NZ_PUXG01000025.1)
  NZ_PUXG01000026 (original name was: NZ_PUXG01000026.1)
  NZ_PUXG01000027 (original name was: NZ_PUXG01000027.1)
  NZ_PUXG01000004 (original name was: NZ_PUXG01000004.1)
  NZ_PUXG01000005 (original name was: NZ_PUXG01000005.1)
  NZ_PUXG01000032 (original name was: NZ_PUXG01000032.1)
  NZ_PUXG01000012 (original name was: NZ_PUXG01000012.1)
  NZ_PUXG01000006 (original name was: NZ_PUXG01000006.1)
  NZ_PUXG01000033 (original name was: NZ_PUXG01000033.1)
  NZ_PUXG01000035 (original name was: NZ_PUXG01000035.1)
  NZ_PUXG01000016 (original name was: NZ_PUXG01000016.1)
  NZ_PUXG01000010 (original name was: NZ_PUXG01000010.1)
  NZ_PUXG01000013 (original name was: NZ_PUXG01000013.1)
  NZ_PUXG01000017 (original name was: NZ_PUXG01000017.1)
  NZ_PUXG01000001 (original name was: NZ_PUXG01000001.1)
  NZ_PUXG01000029 (original name was: NZ_PUXG01000029.1)

Compact view
c00012_NZ_PUXG.. - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 11,503 - 52,660 nt. (total: 41,158 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000286.1 |  | 0.23 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000913.1 |  | 0.17 | Other | MK-8 | Enterobacter cloacae
BGC0001387.1 |  | 0.17 | Other | nucleocidin | Streptomyces calvus
BGC0000888.1 |  | 0.16 | Other | bacilysin | Bacillus sp. CS93
BGC0000205.1 |  | 0.16 | Polyketide | bryostatin | Candidatus Endobugula sertula
BGC0001184.1 |  | 0.15 | Other | bacilysin | Bacillus velezensis FZB42
BGC0001080.1 |  | 0.14 | Other (Phenazine) | endophenazine A, endophenazine B | Streptomyces anulatus
BGC0000509.1 |  | 0.14 | RiPP | epilancin 15x | Staphylococcus epidermidis
BGC0001547.1 |  | 0.13 | Terpene | citreohybridonol | Aspergillus stellatus
BGC0001810.1 |  | 0.13 | Polyketide | trehangelin | Polymorphospora rubra

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000286.1 |  | 0.56 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000913.1 |  | 0.49 | Other | MK-8 | Enterobacter cloacae
BGC0001387.1 |  | 0.48 | Other | nucleocidin | Streptomyces calvus
BGC0000888.1 |  | 0.47 | Other | bacilysin | Bacillus sp. CS93
BGC0000205.1 |  | 0.46 | Polyketide | bryostatin | Candidatus Endobugula sertula
BGC0001184.1 |  | 0.45 | Other | bacilysin | Bacillus velezensis FZB42
BGC0001080.1 |  | 0.44 | Other (Phenazine) | endophenazine A, endophenazine B | Streptomyces anulatus
BGC0000509.1 |  | 0.43 | RiPP | epilancin 15x | Staphylococcus epidermidis
BGC0001547.1 |  | 0.42 | Terpene | citreohybridonol | Aspergillus stellatus
BGC0001810.1 |  | 0.42 | Polyketide | trehangelin | Polymorphospora rubra

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00015_NZ_PUXG.. - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 40,534 - 69,047 nt. (total: 28,514 nt) Show pHMM detection rules used
Region on contig edge.
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001075.1 |  | 0.23 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0000234.1 |  | 0.21 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001538.1 |  | 0.18 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0000044.1 |  | 0.18 | Polyketide | dawenol | Stigmatella aurantiaca DW4/3-1
BGC0001475.1 |  | 0.17 | Polyketide | aspterric acid | Aspergillus terreus NIH2624
BGC0001366.1 |  | 0.17 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000253.1 |  | 0.16 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000261.1 |  | 0.16 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0001928.1 |  | 0.16 | Other | (2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid | Streptomyces sp. MA37
BGC0001730.1 |  | 0.16 | Polyketide | paramagnetoquinone 1, paramagnetoquinone 2 | Actinoallomurus sp.

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001075.1 |  | 0.56 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0000234.1 |  | 0.54 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001538.1 |  | 0.50 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0000044.1 |  | 0.49 | Polyketide | dawenol | Stigmatella aurantiaca DW4/3-1
BGC0001475.1 |  | 0.49 | Polyketide | aspterric acid | Aspergillus terreus NIH2624
BGC0001366.1 |  | 0.48 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000253.1 |  | 0.47 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000261.1 |  | 0.47 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0001928.1 |  | 0.47 | Other | (2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid | Streptomyces sp. MA37
BGC0001730.1 |  | 0.47 | Polyketide | paramagnetoquinone 1, paramagnetoquinone 2 | Actinoallomurus sp.

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names